Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01140 ATGCCGAACCAAGATATTAGCAGCTACCTTAAAGAACCTCGTCTTGTGGCCAGAAAGTTCTTGGCCAGACCTCAACATGAGGGTGTTGGGGCAGTTGTTAGAAGAAGCATAGGGAGATTTGAGCTCAAGAACTTCGATCCTTTCCTTGTCTTGGATGAATTCTCGGTCACGGCTCCTGCTGGGTTTCCTGATCATCCACACAGAGGATTTGAGACAGTCACATACATGTTGCAGGGAGCCATAACACATGAAGATTTTGATGGACGAAAGGGAACAATTGAAGCTGGTGACTTGCAGTGGATGACTGCAGGAAGAGGGATAGTTCACTCAGAAATGCCTGCAGCTCAAGGAACTCAAAAGGGTCTTCAGCTGTGGATCAACCTCTCTTCAAAACATAAAATGATTGAGCCAAGGTACCAAGAAATGCTGAGCAAGGACATAGCAGAAACTATGATAGATGGAATCAAAGTCAGAGTGATAGCAGGGGAAGCTCTTGGAATAAAGTCTCCAATCTACACAAGAACACCAACCATGTACTTGGATTTTTCCCTCAAACCTGGTGCTCACTTGCAGCAACTTATACCAAAATCTTGGAATGCTTTTGTGTACATATTGGAAGGAGAGGGTGTTTTTGGGAACCAAAAGTCTCAACCTGTGACTTCTCATCATATACTTCTTCTTGGTTCTGGGGATGGCCTTGAAGCATGGAACAAATTTTCAAAGGTTCTTAGGTTCATTTTGGTTGGAGGGGAACCTTTGGGGGAACCTGTGGTGCAATTTGGACCTTTTGTGATGAACACTCAAGAAGAGATTGACCAAACAATTGATGATTTTGAGAATTATACCAATGGATTTGAGAAAGCAAGACACTGGAGATCTGAAACTTCACTTAGCCTTGATTATTGA 906 0.4316 MPNQDISSYLKEPRLVARKFLARPQHEGVGAVVRRSIGRFELKNFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAITHEDFDGRKGTIEAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKHKMIEPRYQEMLSKDIAETMIDGIKVRVIAGEALGIKSPIYTRTPTMYLDFSLKPGAHLQQLIPKSWNAFVYILEGEGVFGNQKSQPVTSHHILLLGSGDGLEAWNKFSKVLRFILVGGEPLGEPVVQFGPFVMNTQEEIDQTIDDFENYTNGFEKARHWRSETSLSLDY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01140 301 CDD cupin_pirin_C 176 252 - -
Vian7g01140 301 PANTHER PIRIN-RELATED 9 295 IPR012093 -
Vian7g01140 301 FunFam pirin 27 165 - -
Vian7g01140 301 CDD cupin_pirin_N 31 128 - -
Vian7g01140 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
Vian7g01140 301 Gene3D Jelly Rolls 27 279 IPR014710 -
Vian7g01140 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Vian7g01140 301 Pfam Pirin 33 126 IPR003829 -
Vian7g01140 301 PIRSF Pirin 12 292 IPR012093 -
Vian7g01140 301 Gene3D Jelly Rolls 148 253 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01140 Vian-Chr7 19627207 19630130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01140 13 289 Calmodulin-binding Proteins AT3G59220 58.781 6.61e-123 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01140 K06911 - gmx:100811930 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01140 7 19627207 19630130 Vian7g01140 7 19627207 19630130 ECH
Vian6g00432 6 18290156 18293393 Vian7g01140 7 19627207 19630130 PCT