Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01118 ATGTTGAGAAGGCACTCCCTTCTGAGTTCAACACCAAAACAAGTGTCCCTCTTTTTTGTTAGCCATTTCCATTCCACCCTTTTCACTCCATCACCAAAACAAGTGTTCCAAACCCATCATCGTTGGTGGGGTTACCCCAAAAGCTTCAAACCCAGTTTCAACCCCTCCTCACCCTTTTGCAGACACAAAGCCAGCACCTTGCACAGTGGTTCCTCTGTAGAACAAATTGAACATGTCGAAGTTGCTGACCGCGATGTCTGGATGAAAATGAAGGATGAAGCAAGATTTGATGTCACTGTGGAACCCATCTTGTCAGGTTACTACAACACTTCCATTCTCTCTCACAAATCATTAGAAACGGCGTTGGCCAATCACCTTGCCGTCAAACTCAGCAATGCATCTCTTCCTTGCAGCACCCTTTCTGATCTTTTTGTCACGGTTTTGGAAACTGATGAAGCCATCATGGCTGCTGTGAAGAGTGATCTGATTGCAGTTAAGGAGAGAGACCCGGCATGCCTGAACCTCGTGCACTGCTTCTTGAATTTCAAAGGCTTTCTGGCATGTCAAGCTCACAGGGTGGCTCACAAACTGTGGCTGCAGAGGAGGAAGGTTCTTGCTGTCATGATTCAGAACCGGGTTTCTGAGGTTTTTGCGGTGGATATTCATCCGGGGGCAAAGATTGGAAGTGGGATTTTGCTGGATCATGCAACTGGGATTGTGGTGGGAGAGACGGCTGTGATAGGGAACAATGTGTCAATTCTGCATAGTGTGACATTGGGAGGGACTGGTAAGGTTTGTGGAGACAGGCACCCAAAAATTGGTGATGGGGTTCTGATAGGTGCTGGAACTTGTATTTTGGGGAATATTAAGGTTGGTGAAGGGGCAAAGATCGGTGCTGGTTCAGTTGTCATTAAGGATGTTCCTCCTAGGACTACAGTTGTTGGTAACCCTGCTAAGCTGGTAGGAGGAAAGAACAACCCTGTTAAGTTGGATAAGATTCCCAGCTTAACCATGGACCATACTTCACATATTTCTGACTTCTATGATTATTGTGTTTAG 1059 0.4627 MLRRHSLLSSTPKQVSLFFVSHFHSTLFTPSPKQVFQTHHRWWGYPKSFKPSFNPSSPFCRHKASTLHSGSSVEQIEHVEVADRDVWMKMKDEARFDVTVEPILSGYYNTSILSHKSLETALANHLAVKLSNASLPCSTLSDLFVTVLETDEAIMAAVKSDLIAVKERDPACLNLVHCFLNFKGFLACQAHRVAHKLWLQRRKVLAVMIQNRVSEVFAVDIHPGAKIGSGILLDHATGIVVGETAVIGNNVSILHSVTLGGTGKVCGDRHPKIGDGVLIGAGTCILGNIKVGEGAKIGAGSVVIKDVPPRTTVVGNPAKLVGGKNNPVKLDKIPSLTMDHTSHISDFYDYCV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01118 352 Pfam Serine acetyltransferase, N-terminal 86 190 IPR010493 GO:0005737|GO:0006535|GO:0009001
Vian7g01118 352 PANTHER SERINE ACETYLTRANSFERASE 80 351 - -
Vian7g01118 352 FunFam Serine acetyltransferase 220 346 - -
Vian7g01118 352 Gene3D Hexapeptide repeat proteins 220 340 - -
Vian7g01118 352 Gene3D serine acetyltransferase, domain 1 69 219 IPR042122 -
Vian7g01118 352 Pfam Bacterial transferase hexapeptide (six repeats) 270 304 IPR001451 -
Vian7g01118 352 CDD LbH_SAT 217 317 IPR045304 -
Vian7g01118 352 SUPERFAMILY Trimeric LpxA-like enzymes 87 322 IPR011004 -
Vian7g01118 352 SMART SATase_N_2_a 86 190 IPR010493 GO:0005737|GO:0006535|GO:0009001
Vian7g01118 352 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 279 307 IPR018357 GO:0016740
Vian7g01118 352 NCBIfam serine O-acetyltransferase 158 319 IPR005881 GO:0005737|GO:0006535|GO:0009001
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01118 Vian-Chr7 19362601 19363659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01118 86 348 Miscellaneous Gene Families AT2G17640 52.045 4.24e-89 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01118 K00640 - gmx:100820316 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01118 7 19362601 19363659 Vian7g01118 7 19362601 19363659 ECH
Vian6g00463 6 19249153 19250334 Vian7g01118 7 19362601 19363659 PCT