Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01111 ATGGCGCCGGTGGCAGCGAGAAGCGCGGGCGCCGTGGGTGTTGGTGTCGCAATCTTCATCTCAGTCGCTCTCACAACCTATTTAATCTGTGACCGCCGCTCCAAGAAGAAGAACATATCAAGGAAGAATGGGGTCGTGGAGGCCATCGGTAACACCCCTCTCATTCGGATCAACAGCCTCTCCGACGCCACTGGTTGTCAAATTCTCGGCAAGTGCGAGTTCTTGAATCCCGGAGGCAGTGTCAAGGACCGTGTTGCTCTTCAAATAATTCAAGAGGCTCTGGAATCTGGCCAGCTACGTCCAGGTGGAATAGTCACTGAAGGGAGTGCTGGAAGTACTGCCATTAGCATTGCTACTGTTGCTCCTGCCTATGGGTGCAAGACCCACGTGGTTATACCAGATGATGCTGCCATTGAGAAGTCTCAAATACTTGAAGCCCTTGGGGCAACTGTTGAAAGAGTGCGACCAGTGTCCATTACTCACAAAGACCATTTTGTAAATATCGCAAGAAGACGGGCATCTGAAGCAAATGAGTTTGCGCTGAAACAGAGAAATTTACAACTGAATGACAAGGACACTGCGAAAATAAATGGTTATGAATCTGATGGATACCATTATAGCTCTCTGTTTCCTAGTGACTGCCAAGGTGGGTTTTTTGCAGATCAGTTTGAAAACTTAGCGAACTTCAGGGCCCATTACCAGGGTACAGGGCCTGAGATTTGGGAACAGACCAATGGAAAGTTAGACGCATTTGTTGCAGCAGCAGGCACTGGTGGCACTGTGGCTGGTGTTTCTACGTTTCTTCAGGAAAAGAATCCAGAAATCAAATGCTTCCTCGTAGATCCTCCAGGTTCTGGTTTGTATAATAAGGTAACTCGGGGAGTGATGTACACCAAAGAGGAGGCTGAAGGAAAAAGACTTAAGAATCCATTTGACACTATAACAGAAGGAATTGGAATTAACAGGATAACAAAGAATTTTGCGATGGCAAAACTTAATGGCGCCTTTAGAGGCACCGATAGGGAGGCTGTTGAAATGGCTAGGTTTCTTTTGAAGAACGATGGGCTCTTCCTCGGGAGTTCATCTGCAATGAACTGTGTCGGAGCAGTTAGAGTAGCACAGGCAATTGGCCCTGGCCATACCGTTGTGACCATACTCTGCGATAGTGGAATGAGACATTTGAGCAAGTTCTGTAATGTTGAATACTTGTCTGAGCTGGGTTTGACACCGAAAGCCGCTGGATTGGAGTTCTTGGGCATCGAATGA 1266 0.4739 MAPVAARSAGAVGVGVAIFISVALTTYLICDRRSKKKNISRKNGVVEAIGNTPLIRINSLSDATGCQILGKCEFLNPGGSVKDRVALQIIQEALESGQLRPGGIVTEGSAGSTAISIATVAPAYGCKTHVVIPDDAAIEKSQILEALGATVERVRPVSITHKDHFVNIARRRASEANEFALKQRNLQLNDKDTAKINGYESDGYHYSSLFPSDCQGGFFADQFENLANFRAHYQGTGPEIWEQTNGKLDAFVAAAGTGGTVAGVSTFLQEKNPEIKCFLVDPPGSGLYNKVTRGVMYTKEEAEGKRLKNPFDTITEGIGINRITKNFAMAKLNGAFRGTDREAVEMARFLLKNDGLFLGSSSAMNCVGAVRVAQAIGPGHTVVTILCDSGMRHLSKFCNVEYLSELGLTPKAAGLEFLGIE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01111 421 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 39 402 IPR036052 -
Vian7g01111 421 Pfam Pyridoxal-phosphate dependent enzyme 48 388 IPR001926 -
Vian7g01111 421 FunFam Cysteine synthase, putative 49 78 - -
Vian7g01111 421 Gene3D - 76 183 IPR036052 -
Vian7g01111 421 PANTHER CYSTATHIONINE BETA-SYNTHASE 43 399 - -
Vian7g01111 421 FunFam Cysteine synthase 230 394 - -
Vian7g01111 421 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 71 89 IPR001216 GO:0006535
Vian7g01111 421 Gene3D - 208 402 IPR036052 -
Vian7g01111 421 CDD CBS_like 50 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01111 Vian-Chr7 19285372 19287602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01111 40 395 Miscellaneous Gene Families AT3G04940 29.330 1.66e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01111 K01738 - gmx:100799081 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01111 7 19285372 19287602 Vian7g01111 7 19285372 19287602 ECH