Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01102 ATGGCGCAGGTGCTGTACATGGCTTTACCTGTCCCCGCAAAACCCCGCAAAGCTGCATCCTCATCTTCTTCTTCCAAGCCATTGAAGCTTCCCCGTAGAAGCCGCTCCACCAACATATCCATTCCTACTGTCAAAGGCAGTGGCAGACGTTTGCTCAAACCCCAGAAGCTGAATTTAGAGGTTTCTCCTCACAGAGCTGTTTCAGCGGTGAGATTGATGCGAATTGAGCTCGGTGGTGCTTTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCTGGTGAAAACGAGATGGGATATGTTCAAAGAACGCTCGGTTTTCGCACTCGGGAATTGAGTCATCATGACCTTAGATTGGTCACAGACATTGTTGGTGGCACAATTCGCTGGAGAAGATATCTTGATCATCTGATCAATTCACTGTGTCATGATAAAGATATATCTAGCATGGAACCTCTTCTCTTACAGGTGAATTTGAGCTCTATATTTATTACGATCATGTTTAGTGATTATTTTGCACTTAAGTGGGTGCAAACCTCACAACGGTACTCTTCCTTTGCCCAAAGATTTGGATACATATCATTGGTCAAACATAATTTTAAGAGTATTCTTAGAAGTAAAGAAGGTTGGTTTCTTGATAATCCGATTATAAACCTTGAGGACAAGGTAAAATTTAATAAAAACATTTTCTTATTGCTCCTTTTGCAGTGGATGGTAAGGAGATGGACAAAGTATCTCGGCCAGGAAGAAGCCATTAAATTGATGATATGGAACAACAGTGAGCCCAGTTTCAGCTTAAGGCAAGTGAATCTTTCTTCCATTTATTTAGATGACCTTGTGGCACAGCTTAATGCATTGAAGGTCCCTCACAAGCTTTCATTGTATTTAGATGAATTTGTTCGTGTCAAAACTGGGTTGCAGATTGTCATTCATGCTGGTCTGCTCAAAAAGGGTTTATGTTCAGTTCAGGATGAAAGTGCAGGTCTAGTAGTTTCTGTTGTGGATCCTCAACCTGGTGAAACTATCGTGGATGGCTGTGCTGCTCCTGGTGGGAAGACCCTATACATGGCCTCTCATTTAAGTGGCCAAGGTAAGGTATTTGCAGTTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTGGATGGTGTCATTACCGCCATTCATGCTGATCTTCGTACATTGACTGATAATGAACAACTTAAGAGTGACAAAGTTTTGTTGGATGCTCCATGTTCTGGACTTGGTGTTCTATCCAAGAGAGCGGACTTGCGCTGGAACAGGGCGCTTAAGGATATGGAAGAACTGAAGAAATTACAAGATGAGCTACTGGATGCAGCATCCAAATTGGTAAAACCTGGGGGAGTATTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAACGATGACAGGGTGGCTGCATTTCTTGTAAGACATCCGGATTTCCGCATTGATCCTGTAGACAGATATGTTCCTCCTGATTTTGTGACAAGCAGTGGTTTCTTTTTCTCCAACCCAGTTAAACATTCACTAGATGGTTCCTTTGCTGCTCGTTTGGTACGAGATTCATAG 1593 0.425 MAQVLYMALPVPAKPRKAASSSSSSKPLKLPRRSRSTNISIPTVKGSGRRLLKPQKLNLEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQVNLSSIFITIMFSDYFALKWVQTSQRYSSFAQRFGYISLVKHNFKSILRSKEGWFLDNPIINLEDKVKFNKNIFLLLLLQWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRQVNLSSIYLDDLVAQLNALKVPHKLSLYLDEFVRVKTGLQIVIHAGLLKKGLCSVQDESAGLVVSVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTLTDNEQLKSDKVLLDAPCSGLGVLSKRADLRWNRALKDMEELKKLQDELLDAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDPVDRYVPPDFVTSSGFFFSNPVKHSLDGSFAARLVRDS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01102 530 MobiDBLite consensus disorder prediction 12 40 - -
Vian7g01102 530 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 234 528 IPR029063 -
Vian7g01102 530 PRINTS Viridiplantae FMU-related RCMT signature 487 499 IPR023268 -
Vian7g01102 530 PRINTS Viridiplantae FMU-related RCMT signature 94 110 IPR023268 -
Vian7g01102 530 PRINTS Viridiplantae FMU-related RCMT signature 70 93 IPR023268 -
Vian7g01102 530 PRINTS RNA (C5-cytosine) methyltransferase signature 410 422 IPR023267 GO:0001510
Vian7g01102 530 PRINTS RNA (C5-cytosine) methyltransferase signature 511 528 IPR023267 GO:0001510
Vian7g01102 530 PRINTS RNA (C5-cytosine) methyltransferase signature 460 476 IPR023267 GO:0001510
Vian7g01102 530 PRINTS RNA (C5-cytosine) methyltransferase signature 313 327 IPR023267 GO:0001510
Vian7g01102 530 PRINTS RNA (C5-cytosine) methyltransferase signature 342 352 IPR023267 GO:0001510
Vian7g01102 530 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 235 528 IPR023267 GO:0001510
Vian7g01102 530 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 254 529 IPR001678 GO:0008168
Vian7g01102 530 MobiDBLite consensus disorder prediction 17 40 - -
Vian7g01102 530 FunFam 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB 230 324 - -
Vian7g01102 530 Pfam NusB family 96 155 IPR006027 GO:0003723|GO:0006355
Vian7g01102 530 CDD AdoMet_MTases 340 466 - -
Vian7g01102 530 Pfam 16S rRNA methyltransferase RsmB/F 332 526 IPR001678 GO:0008168
Vian7g01102 530 Gene3D Vaccinia Virus protein VP39 327 530 IPR029063 -
Vian7g01102 530 Gene3D Sun protein; domain 3 222 326 - -
Vian7g01102 530 FunFam Ribosomal RNA small subunit methyltransferase B 325 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01102 Vian-Chr7 19236636 19245444 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01102 K03500 - gmx:100779327 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01102 7 19236636 19245444 Vian7g01102 7 19236636 19245444 ECH