Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01096 ATGTGTATTACTAATCAGGAAGTTATCAAGCAGTTGGAGTCCCTTTTGCAAAACTTGGATGAGCAACAGAAGAACACATTCCAGAATATGCACCAGGGCTATCCAACAGAAACATTAGTGCGGTTTCTCAAAGCAAGGGACGGGAATGTTGTGAAAGCACATAAAATGTTGATTGATTGTTTACAATGGAGAGTAGAAAATGAGATTGACAATGTTTTAGCGAAGCCTATACCACCTGGTTTATACAGACGTTTGCGAGATTCTCAACTCGTGGGAATGTCTGGTTTCACAAAGGAGGGCTTACCTGTCATTGCTATTGGTGTTGGGCTCAGCACATTTGATGAATCGTTTGACAAATACTATATACAGTCGCACATCCAAATGAATGAATATAGGGATCGAGTGATCATGCCAAGAGCTACAAAGAATCATGGAAGACACATTGATACTTGTGTGAAAGTCTTGGATATGACTGGTTTAAAACTCTCAGCACTGAACCAATTGAAGCTTTTGACAGCTATAACAACAATAGATGACTTGAACTATCCAGAAAAGACTGACGCATATTACATAGTTAACGTTCCATATGTATTCTCAGCGTGTTGGAAGGTTGTAAAGCCTCTTTTGCAGGAAAGAACAAGGAAGAAAGTCCATGTTCTCAAAGGTTGTGGCACGGAGGAATTACTCAAGGTAATGGACTATGCATCCCTCCCACATTTTTGCAGAAAGGAGGATTCCAGGGTGCCCCAACATCATGAAGCTGGAAACACTGAAAATTGTTTCTTCATTGATCATGTCTTCCATAAACAACTATATAATTACACCGAGCAGCAGGCTATATTCATAGAGTCCATATCCCAGGATTCTTTCCATGTAGATTTACCTGAGCCAGACCCAGTTGATGCCAAAATTGCCAAGACTATAGAAACTGAGTTCCATAAACTGGAAATTCAGAATGGCCTTACCAATTGA 972 0.4012 MCITNQEVIKQLESLLQNLDEQQKNTFQNMHQGYPTETLVRFLKARDGNVVKAHKMLIDCLQWRVENEIDNVLAKPIPPGLYRRLRDSQLVGMSGFTKEGLPVIAIGVGLSTFDESFDKYYIQSHIQMNEYRDRVIMPRATKNHGRHIDTCVKVLDMTGLKLSALNQLKLLTAITTIDDLNYPEKTDAYYIVNVPYVFSACWKVVKPLLQERTRKKVHVLKGCGTEELLKVMDYASLPHFCRKEDSRVPQHHEAGNTENCFFIDHVFHKQLYNYTEQQAIFIESISQDSFHVDLPEPDPVDAKIAKTIETEFHKLEIQNGLTN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01096 323 SMART sec14_4 85 246 IPR001251 -
Vian7g01096 323 Coils Coil 5 29 - -
Vian7g01096 323 Gene3D - 4 272 IPR036865 -
Vian7g01096 323 CDD SEC14 90 240 IPR001251 -
Vian7g01096 323 SUPERFAMILY CRAL/TRIO domain 82 240 IPR036865 -
Vian7g01096 323 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Vian7g01096 323 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 78 238 IPR001251 -
Vian7g01096 323 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 322 - -
Vian7g01096 323 Pfam CRAL/TRIO domain 89 240 IPR001251 -
Vian7g01096 323 Pfam CRAL/TRIO, N-terminal domain 10 59 IPR011074 -
Vian7g01096 323 SUPERFAMILY CRAL/TRIO N-terminal domain 13 75 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01096 Vian-Chr7 19176423 19179620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01096 29 315 Acyl Lipid Metabolism Gene Families AT1G55840 66.667 9.52e-149 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01096 K26544 - gmx:100815791 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01096 7 19176423 19179620 Vian7g01096 7 19176423 19179620 ECH
Vian6g00504 6 20141007 20145844 Vian7g01096 7 19176423 19179620 PCT