Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01012 ATGAAGAACCTTCTCTTACTTTTTCCCTTTCTCTTTCTCCTCCTCTCCTCCGCCGTCAATGGCGCTCACAACATCACGCACATCCTCGAGAAACACCCGGGCTTCTCCACCTTCAACCACTACCTCACCGTCACACACCTCGCCGACGAGATAAACCGCCGCCAGACTATCACCGTGCTCGCCATCGACAATGGCGCCATGAACTCCCTCCTCGACAAGCACCTCACCCTCCCCACCCTCAAAAACGTCCTCTCCCTCCACGTACTCGTCGACTACTTCGGCGCCAAGAAGCTCCACCAGATCAACAACAGCACCACCCTCGTCTCCTCCATGTTCCAGGCCACCGGAGCAGCAGCCGGAACCTCCGGCTACGTCAACATCACCAACCTCAAGGGCGGCAAGGTGGGCTTCGCCGCCGAGGACAACGACGGCTCCCTCCACTCCTTCTTCGTCAAGTCCCTCCAAGAATTCCCCTACTACATCTCCGTCCTCCAAATCAGCAACCCCATAAACTCCGCCGACGCCGAAGCCCCCACCGCCGCACCCTCCGCCATCGACCTCATATCAATTATGTCCAAACAAGGCTGCAAGTCCTTCGCCGACCTTCTTAGAGGCTCCAAAGCGCTTCCGGCTTTCAAAGAAAGCATCGACGGCGGCTTGACGGTTTTCTGCCCCACCGACAGCGCCGTCAACGGGTTCGCTCCCAAGTACAAGAACCTCACCGACTCGCAAAAAGTTTCACTCTTGTTGTACCACGGCGTTCCCCTTTACGAGTCCCTGCAGATGCTGAAGTCCAGCAACGGCCTCATGAACACTCTCGCCACCGAGGGAGCCAACAAGTACGATTTCACCGTCCAGACTGACGGCGAAGACGTGAGTCTGAAGACGAAGGTGAACACTGTCAGCATAATCGGCACGCTCATAGATCAAGACCCCTTCGTGGCCTACAAGATCAACAAGGTCTTGATGCCCAGAGAGTTGTTCAAGGCCTCCGACGCCGACGACGAAGCACCCGCAGAGTCACCAAAGCCTTCCAAGAAGAAGGGCAAGAAGGGAGTGCACGATTCCGCCGCCGATGCTCCCGCCGACGGACCCTCGTCGGATTCCGAAGATCAGAAAGCCGCCGATGAAGACAGCAACAATGTAAGTGGATTGCACGACGGCGTAAGATTGGTGTCGGCGGCGTTGTTCAGTGTGTTGATTGGATTTTTGGTTCTATGA 1221 0.5651 MKNLLLLFPFLFLLLSSAVNGAHNITHILEKHPGFSTFNHYLTVTHLADEINRRQTITVLAIDNGAMNSLLDKHLTLPTLKNVLSLHVLVDYFGAKKLHQINNSTTLVSSMFQATGAAAGTSGYVNITNLKGGKVGFAAEDNDGSLHSFFVKSLQEFPYYISVLQISNPINSADAEAPTAAPSAIDLISIMSKQGCKSFADLLRGSKALPAFKESIDGGLTVFCPTDSAVNGFAPKYKNLTDSQKVSLLLYHGVPLYESLQMLKSSNGLMNTLATEGANKYDFTVQTDGEDVSLKTKVNTVSIIGTLIDQDPFVAYKINKVLMPRELFKASDADDEAPAESPKPSKKKGKKGVHDSAADAPADGPSSDSEDQKAADEDSNNVSGLHDGVRLVSAALFSVLIGFLVL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01012 406 SUPERFAMILY FAS1 domain 181 325 IPR036378 -
Vian7g01012 406 MobiDBLite consensus disorder prediction 331 357 - -
Vian7g01012 406 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4 389 IPR033254 -
Vian7g01012 406 ProSiteProfiles FAS1/BIgH3 domain profile. 183 322 IPR000782 -
Vian7g01012 406 MobiDBLite consensus disorder prediction 331 384 - -
Vian7g01012 406 SMART fasc_3 221 325 IPR000782 -
Vian7g01012 406 FunFam Fasciclin-like arabinogalactan protein 10 176 325 - -
Vian7g01012 406 SUPERFAMILY FAS1 domain 28 141 IPR036378 -
Vian7g01012 406 Gene3D FAS1 domain 22 149 IPR036378 -
Vian7g01012 406 Gene3D FAS1 domain 187 324 IPR036378 -
Vian7g01012 406 ProSiteProfiles FAS1/BIgH3 domain profile. 22 189 IPR000782 -
Vian7g01012 406 FunFam Fasciclin-like arabinogalactan protein 2 21 163 - -
Vian7g01012 406 Pfam Fasciclin domain 34 107 IPR000782 -
Vian7g01012 406 Pfam Fasciclin domain 196 324 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01012 Vian-Chr7 18447776 18448996 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01012 - - gmx:100805178 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01012 7 18447776 18448996 Vian7g01012 7 18447776 18448996 ECH