Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00600 ATGAGTTCCATTTCTAGTCCAGCCATAGACACACCAACAACAAAACACATCATGACCTCGGATTCCCATGGTTTGTCAGATTCAAGGACAATAGGGGAACGTGTGTGTGCAGCGTTGACGCCATTGATGGTGGCTGTCGCAGGTTGTTTGGGTTATTGCTCAAACAGCGTTGTGCAGGAGAACAAACGTTGTCCCTACACTGATGAGGATTTCGCAACGCTTGCTGCTTCAACAAGATTCACAATTAAGGAAGTGGAGGCATTGCATGTGTTGTTTAAAAGGTTAAGTAGCACCCTAATCGATGATGGTTTTATTCACAAGGAGGAGCTTCAATTGGCATTGTTTCACACACCAAATGGAAAATATTTTTTCCTTGATCGAGTTTTTGATGTTTTTGACCAAAAAAGAAATGGTGTAATTGAGTTTGACGAATTTGTCCTTGCTCTCAGTGTTTTCCATCCATATGCCCCCATAGTTGCATTTAAGCTCTATGACCTCAACCAAACTGGATTTATCGGAAGAGAGGAAGTGAAGCAAATGGTTGTAGCCATTTTGATTGAATCAGACATGAATCTTCCTGATGATCTTCTTGATGCTATTGTGGACAAGACAATTGCTGATGTGGATAAGGACAGTGATGGTAAAATCAGTAAAGAAGATTGGAAAGCTTTTGTGAGTGAAAATCCATCCCTCTTGATGAACATGACACTTCCTTACTTGAAGTATGATTTATAA 735 0.4041 MSSISSPAIDTPTTKHIMTSDSHGLSDSRTIGERVCAALTPLMVAVAGCLGYCSNSVVQENKRCPYTDEDFATLAASTRFTIKEVEALHVLFKRLSSTLIDDGFIHKEELQLALFHTPNGKYFFLDRVFDVFDQKRNGVIEFDEFVLALSVFHPYAPIVAFKLYDLNQTGFIGREEVKQMVVAILIESDMNLPDDLLDAIVDKTIADVDKDSDGKISKEDWKAFVSENPSLLMNMTLPYLKYDL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00600 244 ProSiteProfiles EF-hand calcium-binding domain profile. 196 231 IPR002048 GO:0005509
Vian7g00600 244 Pfam EF hand 125 145 IPR002048 GO:0005509
Vian7g00600 244 CDD EFh 160 226 IPR002048 GO:0005509
Vian7g00600 244 FunFam calcineurin B-like protein 3 70 243 - -
Vian7g00600 244 ProSitePatterns EF-hand calcium-binding domain. 209 221 IPR018247 -
Vian7g00600 244 ProSiteProfiles EF-hand calcium-binding domain profile. 120 155 IPR002048 GO:0005509
Vian7g00600 244 SMART efh_1 200 228 IPR002048 GO:0005509
Vian7g00600 244 SMART efh_1 124 152 IPR002048 GO:0005509
Vian7g00600 244 SMART efh_1 156 184 IPR002048 GO:0005509
Vian7g00600 244 ProSitePatterns EF-hand calcium-binding domain. 165 177 IPR018247 -
Vian7g00600 244 PANTHER CALCINEURIN B 62 241 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vian7g00600 244 Gene3D - 70 243 - -
Vian7g00600 244 Pfam EF-hand domain pair 160 224 IPR002048 GO:0005509
Vian7g00600 244 PRINTS Recoverin family signature 128 149 - -
Vian7g00600 244 PRINTS Recoverin family signature 216 236 - -
Vian7g00600 244 PRINTS Recoverin family signature 66 80 - -
Vian7g00600 244 MobiDBLite consensus disorder prediction 1 25 - -
Vian7g00600 244 SUPERFAMILY EF-hand 72 240 IPR011992 -
Vian7g00600 244 ProSiteProfiles EF-hand calcium-binding domain profile. 160 187 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00600 Vian-Chr7 13869475 13873035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00600 76 241 EF-hand Containing Proteins AT5G24270 60.819 1.23e-69 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00600 K06268 - gmx:100810494 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00600 7 13869475 13873035 Vian7g00600 7 13869475 13873035 ECH