Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00561 ATGAAGCTTTGGTGCTGTCTATGCTTCACTGAAGAGGAACAAGATACCCTAAACCTCATGAAGGAAGAGGACATTTCCGAAAACGACGTCGTTCCCGGCGTTGGAGCTGCTGCTGTCGCTGACCACCACGCTGACGACAACCGCGACGATGACCGATTCGCGATGACGCCGGTGCAGCCGCGCGCCGAGGCATTGGTCTCGTGGACCGGCGAGTGCAGCGCCGCCGCGTGCTCGGACAGCACCGTCGCAGGCAGCGTCGAGAGCCGCGATTTGAGCCACAAACGCGCTAAGTTCTACGCCGATTTCGAGGAGCGGTACTTTTCGACGAATGCAGGGAAATGCAGTGCATCTAATGAATATGGAGACTATGACTTCATTAACGATTCTCTTCGAACCAACGGTGAGACTTTTTGTGATACATTTGCATTGATGGGCGGTGGTGAGGAGAGTGGTTTTGATTCCAGCATTGTGGAAGACGGTGAAGGAGATAATAGTGATATCTTGAAAGTGGAAGATGTAGAGGTCAGAATGGATCTCACCGATGACTTGTTGCATATGGTTTTCTCGTTTTTGGATCATCCCAATCTTTGCAAAGCTGCCAGGGTTTGTAAACAGTGGCGAAGTGCAAGTGCTCATGAAGATTTCTGGAAAAGCTTGAATTTTGAAGATCGTAACATTTCTGTCGAACAATTTGAGGACATGTGTAGGCGTTATCCCAATGCCACAGCAGTGAGCATATCTGGTTCTGCTATTTACTTGCTTGTCATGAGGGCCATCTCTTCATTAAGGAATCTTGAGGTTCTAACATTAGGAAGAGGACAAATAGCTGATACTTTTTTCCATGCTTTAGCTGATTGTTCTATGTTAAAAAAGTTGAATATAAATGATTCTACACTTGGCAATGGCATTCAAGAGATAACTATAAATCATGACAGATTGTGTCATCTTCAATTAACAAAATGCCGTGTGATGCGAATAGCAGTCAGGTGCCCACAACTGGAAACTATGTCATTGAAGCGCAGTAACATGGCACAGGTTGTACTCAATTGTCCACTTTTGCATGAGCTTGATATAGGCTCTTGCCACAAACTTCCTGATGCTGCAATACGAGCTGCTGCAACTTCATGCCCTCAACTTGTTTCACTGGACATGTCAAATTGTTCTTGTGTCAGTGATGAAACTCTGCGTGAAATAGCATTGAGTTGTGCTAGCCTTAGTTTTCTTGATGCATCATACTGCCCAAACATTTCTCTGGAGTCTGTTAGACTGCCGATGTTGACAGTTCTAAAGCTTCATAGTTGTGAGGGGATCACTTCTGCCTCGATGGCTGCAATTGCTCATAGTGATATGTTGGAGGTTTTGGAGCTTGATAATTGTAGCCTGCTGACATCAGTGTCATTGGATCTTCCCCGTTTGCAGACTATTAGATTGGTACACTGTCGCAAGTTTGCCGATTTAAACTTGAGGACTATGATGCTTTCTAATATTCTGGTATCAAACTGTCCTGCACTTCATCGTATCAATATCACTTCAAATTCACTTCAAAAACTACCATTGCAAAAGCAAGAAAGTTTAACCACCTTAGCTCTACAATGTCAATCTTTACAAGAAGTGGACCTCTCAGAGTGTGAATCTTTGACAAACTCTATATGTGATGTTTTTAACGATGTTGGAGGATGCCCTATGCTGAAATCACTAGTTCTAGCTAATTGTGAGAGCTTGACTTCGGTTCGGTTCTTCAGCACCTCTTTGGTCAGTCTTTCCCTTGCTGATTGTCGGGCAATCACTACTCTGGAGCTCACATGCCCCAACCTTGAGAAAGTCATTTTGGATGGTTGTGATCATTTAGAAAGAGCATCCTTTTGTCCTGTTGGTCTTCGATCTCTCAATTTAGGAATATGTCCAAAATTAAATATACTCAGCATAGAAGCCACGGCTATGGTCTCACTTGAGTTGAAAGGATGTGGTGTACTGTCTGAAGCATCAGTTAATTGTCCTCTCTTGACATCTTTGGATGCTTCATTTTGCAGCCAACTCACTAATGAATGCTTGTCTGCAACAACTGCCTCTTGCCCAATGATTGAATCATTAATATTGATGTCATGCTCATCAATTGGTTTGGATGGACTGTGTTCTTTGCAGCGGCTCCCAAATTTGACCCTACTTGATTTGTCGTATACCTTTTTGGTCAATTTGCAGCCTGTTTTTGAGTCTTGTACACAGCTAAAGGTATTAAAGTTGCAGGCATGCAAATATCTCACTGACTCATCACTTGAACCCCTCTACAAGAGGGGAGCTTTACCAGCACTTCAGGAGTTAGACTTGTCTTATGCTACACTGTGTCAGTCTGCTATAGAGGAGCTTCTTTCTTGCTGCACACACCTTACACATGTCAACTTGACTGGCTGTGCCAATATGCACGACTTAAATTGGGGATGTAGTCGTGGGCATATTGCTGGTGTAAATGTGCTATCTATTACAAGTTCTTATGAAAATGTCCATGAGCTAAGTGAGCAACCCACTCGACTACTGCAGAACTTAAACTGCGTGGGATGTCTGAACATTCGGAAAGTTTTCATTCCATTAACGGCACATTGTTCCTGTTTGTTGTTTTTAAACCTTTCTCTATCAACGAATTTGAAAGAGGTTGATGTTGCATGTCTCAACCTAAGCTGGCTTAATCTAAGCAATTGTTACTCTTTGGAAGTTTTGAAGCTAGATTGTACAAGATTGACCAGTCTATTCCTCCAGTCTTGCAACATTGACGAAGAAGCAGTAGAGACTGCTATATCCAAATGCACTATGCTGGAGACTCTTGATGTTCGCTTCTGTCCAAAGATTAGCTCAATGAGCATGGGAAGATTGCGTGCAGCATGTCCTAGTTTGAAGCGTATATTCAGCAGCTTGTCAGCTTCATAA 2919 0.433 MKLWCCLCFTEEEQDTLNLMKEEDISENDVVPGVGAAAVADHHADDNRDDDRFAMTPVQPRAEALVSWTGECSAAACSDSTVAGSVESRDLSHKRAKFYADFEERYFSTNAGKCSASNEYGDYDFINDSLRTNGETFCDTFALMGGGEESGFDSSIVEDGEGDNSDILKVEDVEVRMDLTDDLLHMVFSFLDHPNLCKAARVCKQWRSASAHEDFWKSLNFEDRNISVEQFEDMCRRYPNATAVSISGSAIYLLVMRAISSLRNLEVLTLGRGQIADTFFHALADCSMLKKLNINDSTLGNGIQEITINHDRLCHLQLTKCRVMRIAVRCPQLETMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIALSCASLSFLDASYCPNISLESVRLPMLTVLKLHSCEGITSASMAAIAHSDMLEVLELDNCSLLTSVSLDLPRLQTIRLVHCRKFADLNLRTMMLSNILVSNCPALHRINITSNSLQKLPLQKQESLTTLALQCQSLQEVDLSECESLTNSICDVFNDVGGCPMLKSLVLANCESLTSVRFFSTSLVSLSLADCRAITTLELTCPNLEKVILDGCDHLERASFCPVGLRSLNLGICPKLNILSIEATAMVSLELKGCGVLSEASVNCPLLTSLDASFCSQLTNECLSATTASCPMIESLILMSCSSIGLDGLCSLQRLPNLTLLDLSYTFLVNLQPVFESCTQLKVLKLQACKYLTDSSLEPLYKRGALPALQELDLSYATLCQSAIEELLSCCTHLTHVNLTGCANMHDLNWGCSRGHIAGVNVLSITSSYENVHELSEQPTRLLQNLNCVGCLNIRKVFIPLTAHCSCLLFLNLSLSTNLKEVDVACLNLSWLNLSNCYSLEVLKLDCTRLTSLFLQSCNIDEEAVETAISKCTMLETLDVRFCPKISSMSMGRLRAACPSLKRIFSSLSAS 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00561 972 FunFam F-box/LRR-repeat protein 15 422 581 - -
Vian7g00561 972 SMART fbox_2 179 219 IPR001810 GO:0005515
Vian7g00561 972 CDD F-box_FBXO41 181 220 - -
Vian7g00561 972 ProSiteProfiles F-box domain profile. 173 219 IPR001810 GO:0005515
Vian7g00561 972 FunFam F-box/LRR-repeat protein 15 171 420 - -
Vian7g00561 972 SUPERFAMILY RNI-like 626 966 - -
Vian7g00561 972 SUPERFAMILY L domain-like 472 641 - -
Vian7g00561 972 SMART LRR_CC_2 423 448 IPR006553 -
Vian7g00561 972 SMART LRR_CC_2 376 401 IPR006553 -
Vian7g00561 972 SMART LRR_CC_2 469 494 IPR006553 -
Vian7g00561 972 SMART LRR_CC_2 691 716 IPR006553 -
Vian7g00561 972 SMART LRR_CC_2 739 764 IPR006553 -
Vian7g00561 972 SMART LRR_CC_2 532 556 IPR006553 -
Vian7g00561 972 SMART LRR_CC_2 560 590 IPR006553 -
Vian7g00561 972 SMART LRR_CC_2 908 932 IPR006553 -
Vian7g00561 972 SMART LRR_CC_2 792 827 IPR006553 -
Vian7g00561 972 SMART LRR_CC_2 350 375 IPR006553 -
Vian7g00561 972 SMART LRR_CC_2 665 690 IPR006553 -
Vian7g00561 972 SMART LRR_CC_2 767 791 IPR006553 -
Vian7g00561 972 SMART LRR_CC_2 933 958 IPR006553 -
Vian7g00561 972 SMART LRR_CC_2 602 627 IPR006553 -
Vian7g00561 972 SMART LRR_CC_2 286 309 IPR006553 -
Vian7g00561 972 FunFam F-box/LRR-repeat protein 15 732 817 - -
Vian7g00561 972 FunFam F-box/LRR-repeat protein 15 isoform C 825 968 - -
Vian7g00561 972 SUPERFAMILY RNI-like 219 481 - -
Vian7g00561 972 Gene3D Ribonuclease Inhibitor 904 971 IPR032675 -
Vian7g00561 972 SUPERFAMILY F-box domain 177 228 IPR036047 GO:0005515
Vian7g00561 972 Gene3D Ribonuclease Inhibitor 422 583 IPR032675 -
Vian7g00561 972 Gene3D Ribonuclease Inhibitor 730 903 IPR032675 -
Vian7g00561 972 Gene3D Ribonuclease Inhibitor 584 729 IPR032675 -
Vian7g00561 972 Gene3D Ribonuclease Inhibitor 171 421 IPR032675 -
Vian7g00561 972 PANTHER OS10G0396666 PROTEIN 163 971 - -
Vian7g00561 972 Pfam F-box-like 181 221 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00561 Vian-Chr7 13349255 13358876 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00561 - - gmx:100782842 1640.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00561 7 13349255 13358876 Vian7g00561 7 13349255 13358876 ECH