Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00556 ATGGGTGAAGCTCCAGTGTTCTTCATTAACGGGTTCTCAAAGTTTGAACACGAAATCCAACAACAGAACCATGTGAACGACCAGAACCATGATTCCTCTTGGTACGAGGAAATCATCGATGAAGATCTGAAATGGTCTTTTAAACTCAACAGTGTGCTTCATAAAGCGATTAGTGAATACCAGGATATAACACTCTTAGACACCAAGCGTTTTGGCAAGGTTAACAACTCCTCTTCTTCTTCTCATAAGGCAGAACAAAAAGAAAAAGCAATATTGAGACATCTCAAACAAGCTTTGGTTCTTGATGGGAAGATGCAGAGTGCAGAAACAGACGAGTTTATCTATCACGAATGCTTGATTCACCCTTCTCTTTTGTGTCACCCTAATCCCAAGACTGTCTTTATAATGGGCGGAGGCGAAGGCTCTGCAGCAAGGGAAGCCCTTAAGCACAAGTCAATGGACAGAATCGTTATGTGCGACATCGATAAGGAAGTAGTAGATTTCTGCAAAAAATACTTGATTGCAAATAGGGAAGCATTTTCTAATAAGAAGCTGGACCTTGTGATCAATGATGCGAAGGCTGAATTGGTGAAGAGAAAGGAGAGATTTGACATCATTGTTGGAGATTTAGCAGACCCACTTGAAGATGGACCATGTTACCAACTCTACACCAAATCCTTCTATGAGAACACACTCAAACCAAAGTTAAATGATAATGGCATTTTTGTCACCCAGGCTGGACCAGCTGGTATCTTCACACACAAAGAGAGTCAAATAACACAGGATGTTCTGTTTAAACTGAAACTAGAGATATTCTTTTTTGGTACAGATGTCATTGCATACACAACTCATGTACCATCATTTGCTGACACATGGGGATGGGTCATGGCTTCGGATCAACCACTATCAATTTGTGCTGAAGAAATGGACAGAAGAATTGCAGAAAGAATAGATGGAGAACTTCTCTATCTAAATGGTGCTTGGTTCCATTCATCCACAACCATGAATAAAACTGTTTACCAATCTCTGCAGAATGAAACTCATGTGTACACAGAAGAAAATGCTAGATTTATTCCTGGGCATGGAATGGCTTTTCGTCTCTAA 1104 0.4031 MGEAPVFFINGFSKFEHEIQQQNHVNDQNHDSSWYEEIIDEDLKWSFKLNSVLHKAISEYQDITLLDTKRFGKVNNSSSSSHKAEQKEKAILRHLKQALVLDGKMQSAETDEFIYHECLIHPSLLCHPNPKTVFIMGGGEGSAAREALKHKSMDRIVMCDIDKEVVDFCKKYLIANREAFSNKKLDLVINDAKAELVKRKERFDIIVGDLADPLEDGPCYQLYTKSFYENTLKPKLNDNGIFVTQAGPAGIFTHKESQITQDVLFKLKLEIFFFGTDVIAYTTHVPSFADTWGWVMASDQPLSICAEEMDRRIAERIDGELLYLNGAWFHSSTTMNKTVYQSLQNETHVYTEENARFIPGHGMAFRL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00556 367 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 32 299 IPR030374 -
Vian7g00556 367 Pfam Spermidine synthase tetramerisation domain 34 74 IPR035246 -
Vian7g00556 367 Hamap Polyamine aminopropyltransferase [speE]. 33 344 IPR001045 GO:0003824
Vian7g00556 367 Gene3D Spermidine synthase, tetramerisation domain 32 75 IPR037163 -
Vian7g00556 367 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 33 344 IPR029063 -
Vian7g00556 367 Pfam Spermine/spermidine synthase domain 112 292 - -
Vian7g00556 367 Gene3D Vaccinia Virus protein VP39 108 366 IPR029063 -
Vian7g00556 367 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 26 354 - -
Vian7g00556 367 CDD AdoMet_MTases 137 245 - -
Vian7g00556 367 FunFam Polyamine aminopropyltransferase 109 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00556 Vian-Chr7 13204608 13207863 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00556 K18787 - gmx:100815510 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00556 7 13204608 13207863 Vian7g00556 7 13204608 13207863 ECH