Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00480 ATGGAAATGTTCTTAAGAAACCCTTTATACACAAACCCAGAACCTTGTCAGCACCTTGCTGAGTACAAGCTCAAACATGGTTTCAATGGCTACAAAGCCATCCAAAAGCTCCTTGTGACATCCCCTATTGGGAAAACCAGTGTGAAGAAACCCAAGGCGGTACCCAGATGCAGTTTCTGTAATGGCTGTGAAGGGCGGTTCTATTTGTGTCTGATTTGCTCTTCATTCTCATGTTTGGATCACACCATTTTGCACTCTCAGTCAGAAATTGGCCATGCTGTTTTTGTGGACATTGAAAGGGCTGAACTTTATTGTGGGGTGTGCTGTGATCAGTTGTATGACCCTGATTTTGATCGAGTTGTGATGTCTAAGCACTCAATGGGGTTGACAAGTGGTGCCACTGGGAATGAAAGCATTGGGCAGAGGTTGATCAAGAGGAGGAGATTGATTTCTGGGGTTGGGTTGAATTTTCAGAAATCTAAGTGTGGAGTTTCCACCAAGGATATGAGAGCTAAATCATGTTATCCTATGGGGTTGAGGGGATTGAACAATCTGGGTAGCACGTGTTTCATGAATTCTGTGCTCCAAGTGTTGCTTCATGCTCCTCCTGTCAGGGAGTATTTCCTTAGTGGTGGACACAGATTGGAAGCTTGTCATCGTAGAAGAACCACAGATCTGATGTGTTTGCTTTGTGAAGTCAATGCTATTTTTTCAGCTGTGTACTCCGGGGATCAGAATCCATATACTCCTGCTCAGTTTCTATACAGCTGGTGGCAGCATTCAGCAAATTTAGCGAGTTATGAACAGCAGGATGCTCACGAGTTTTTCATTTCGATGTTAGATGCAATCCATGAGAAAGAGGGCAAATCAAGAAATGGAAGCAAAGGTAACGAAGACTGTCAATGCATTGCTCATAGGGTGTTCTATGGGTTATTGAGATCAGATGTTACGTGCATGACCTGTGGATTCACCTCAACAACCTATGATCCTTGTGTTGACATTTCACTTAACTTGAACACCAGTGTCTCTTCAACAGAAAAGGGTAAAAAGCTTAACAAACGGAATGACGATGGAAGTCTGTCTACACTTTCAGGTTGTTTAGATTTGTTCACAAGGCCAGAGAAGTTGGGGTCAGACCAGAAACTTTACTGCCAGAATTGTCAGGAAAAGCAAGACTCTTTGAAGCAAATGTCCATTAGAAAGCTTCCATTAGTACTTAGTTTACATGTGAAACGATTTGAGCACTCTTTAGTCAAAAAGTCTTCAAGAAAAATAGACCGCTACCTACACTTCCCATTTTCCTTAGACTTGTCTCCATATTTGTCCTCCTCAATCCTCAGAGCCAGATATGGAAATAGAATTTATTCTTTTGGGGGTGATGAATCAGATATGTTTTCTGAGTTTGAAATTTTTGCTGTGGTGACTCATTCGGGTACGCTTGAATCCGGCCATTATGTTTCGTTCGTGCGTATAAGGAATCAATGGTACAAATGTGATGATGCTTGGATAACTGAGGTTGATGAAGCTACAGTTAGAGCTTCACAGTGTTACATGATTTTCTATGCTCAGAAAACTTTGTACAATAAAGCAAATGAAGACCAGAGTCACGCTCCAAATTCCCCTGGAAGAGAGCTATATTTTCCTATTGCTGGTTGTTGCTAG 1662 0.4188 MEMFLRNPLYTNPEPCQHLAEYKLKHGFNGYKAIQKLLVTSPIGKTSVKKPKAVPRCSFCNGCEGRFYLCLICSSFSCLDHTILHSQSEIGHAVFVDIERAELYCGVCCDQLYDPDFDRVVMSKHSMGLTSGATGNESIGQRLIKRRRLISGVGLNFQKSKCGVSTKDMRAKSCYPMGLRGLNNLGSTCFMNSVLQVLLHAPPVREYFLSGGHRLEACHRRRTTDLMCLLCEVNAIFSAVYSGDQNPYTPAQFLYSWWQHSANLASYEQQDAHEFFISMLDAIHEKEGKSRNGSKGNEDCQCIAHRVFYGLLRSDVTCMTCGFTSTTYDPCVDISLNLNTSVSSTEKGKKLNKRNDDGSLSTLSGCLDLFTRPEKLGSDQKLYCQNCQEKQDSLKQMSIRKLPLVLSLHVKRFEHSLVKKSSRKIDRYLHFPFSLDLSPYLSSSILRARYGNRIYSFGGDESDMFSEFEIFAVVTHSGTLESGHYVSFVRIRNQWYKCDDAWITEVDEATVRASQCYMIFYAQKTLYNKANEDQSHAPNSPGRELYFPIAGCC 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00480 553 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 180 524 IPR028889 -
Vian7g00480 553 FunFam Ubiquitinyl hydrolase 1 174 529 - -
Vian7g00480 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 131 IPR013083 -
Vian7g00480 553 ProSiteProfiles Zinc finger UBP-type profile. 14 131 IPR001607 GO:0008270
Vian7g00480 553 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 181 196 IPR018200 GO:0004843|GO:0006511
Vian7g00480 553 Gene3D Cysteine proteinases 174 530 - -
Vian7g00480 553 Pfam Ubiquitin carboxyl-terminal hydrolase 181 521 IPR001394 GO:0004843|GO:0016579
Vian7g00480 553 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 131 523 - -
Vian7g00480 553 FunFam Ubiquitinyl hydrolase 1 10 130 - -
Vian7g00480 553 Pfam Zn-finger in ubiquitin-hydrolases and other protein 57 116 IPR001607 GO:0008270
Vian7g00480 553 SUPERFAMILY RING/U-box 15 119 - -
Vian7g00480 553 SUPERFAMILY Cysteine proteinases 176 522 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00480 Vian-Chr7 12044311 12046862 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00480 181 523 Miscellaneous Gene Families AT2G24640 29.745 5.10e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00480 K11366 - gmx:100806347 1021.92