Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00448 ATGTCTTTTGACCTGAAGAGAGAGCTTGCTGTATTGGTCTTAAAGTATTTTCATGACCAAAATTTGAAGGAAGCCGCACTGACGCTTGGTTGTGAAAGTGGGTTGTTCTTTGACATGAAGTATTTTGAGGAGATGGTGCTTAAGGGAAAGTGGGATGAGGCTGAGAACTATCTTTTAGGGTTCACCAAGGTCAAGGACAACGATTACTCAATCAAAATATACTTTGAAATCAGAAAACAGAAATACTTTGAGGCATTGGACAATAACGATCGTTACAAGGCCTTAGACATCCTCTTGAAGGATCTCAAAATCTTTGCACAAGGGAATGAAAAGTTGATCAAAGACCTTTGTCACCTTTTGGTAGTCGATAATATAAGGGAAATTAAACCAACATATCGAGATGCAATTTCTGCGAGGAAGAATCTGATATTTGAAATTAACAAAATTATAATTCAACATCCTCTTTTAGCTGGTAAGCTAAAACTGCCAGACATCGAAATTCACAGACTGCGCCATCTTCTCAATCAAAGCTTAAAATGGCAGAAGCATCAAAGGCCTGATCAAGAACCTGACCTTTTAAGGGATCCTGACAGAGCAGCTATGGAGTGGAAACTTTTAACTGGTAGAAGGCTAAGTATGGATTCAGAACAGAGAAACTGCAATGGAGTTCTGGGAGATGTGAAAAAGGTTTCAATTGAAGAATCCCGTAACAAATCAAAGCATTCATTTGATAATGGAAGATCATCTCAGTGGCAGTACTTGCAGCTCCCTAAGCATCCTGAAGTAAAAAGGATTGTAAAACTGGCTTACAACAATTCGGGGAATTCAATTCTGGCATTGGCATCGAATGGTATTCATCTGGTTTGGCTCTGGCCACGCACTGGCTTTAACTTGGATGGCAAGGCTAGTGTTCAGGTTTGTCCTCAGTTGCAGCAACCAAAGGATGGGTTCCAAGTTATGATCAATGACCTTTCAACTGTCAAATGTTCAAACCCAGTTTCCTGTTTTGCATTATCAAAACAGGGTGGATATGTGATATCAACATCAGGGGGCATGATCTCCTTGTTCAACATGGTCTCCTATAAGACTCTGAGAACCATCATGTCTCCACCACCTATGGTAACATGCCTTGCTTTCTACCCTGAAGATAACAATATATTTGGTATTGGCTTTGATGACTCCAGCTTAAGTATATATAATGTTCGTGATGATCAGGTTTTACAAAAGCTTGATGGTCACTCTAAAAGAGTTACCACTCTTGCCTTCTCAAGCACTTCCAATGTTCTTATATCTGCTGATGCAAATGCTCAGATCATTCTATGGAATACAAATGGGTGGAAAAAGCTGAAAGATAAAAGGTTGCAAATACAAGAAAACCACATGCTAGAATCTGAAACTCAGATTCAGTTGCATCCAGATCAAATGAAATTCCTTGTTGTATATTTTGGTCATGTTGCAATCTATGAAACAACAGAACTAAGATGTGTCAATGAGTGGGTTCCAGAAATTCCACAGCTTATCTCTCAAGCAACCTTCTCATCAAATGGTCACATTGTGTATTCCATTTTGGTTGATGGGACAGTCACAATATTTGATGCAACAAATTTTGAAATTCATTGTAGGATTTCTACGTCCTCTTATCTTCCTCCAATTTCAAGCTTGAGCATCTACCCAATTTCCATTGCTGCACATCCACAGAAACCAAACCAGTTTGTTGTGGGGCTGACAGATGGTAGTGTTTATGTGTTTGAGCCGCAGAAACCAGGTGGTGATTGGATAAAGAATCACTGA 1791 0.3942 MSFDLKRELAVLVLKYFHDQNLKEAALTLGCESGLFFDMKYFEEMVLKGKWDEAENYLLGFTKVKDNDYSIKIYFEIRKQKYFEALDNNDRYKALDILLKDLKIFAQGNEKLIKDLCHLLVVDNIREIKPTYRDAISARKNLIFEINKIIIQHPLLAGKLKLPDIEIHRLRHLLNQSLKWQKHQRPDQEPDLLRDPDRAAMEWKLLTGRRLSMDSEQRNCNGVLGDVKKVSIEESRNKSKHSFDNGRSSQWQYLQLPKHPEVKRIVKLAYNNSGNSILALASNGIHLVWLWPRTGFNLDGKASVQVCPQLQQPKDGFQVMINDLSTVKCSNPVSCFALSKQGGYVISTSGGMISLFNMVSYKTLRTIMSPPPMVTCLAFYPEDNNIFGIGFDDSSLSIYNVRDDQVLQKLDGHSKRVTTLAFSSTSNVLISADANAQIILWNTNGWKKLKDKRLQIQENHMLESETQIQLHPDQMKFLVVYFGHVAIYETTELRCVNEWVPEIPQLISQATFSSNGHIVYSILVDGTVTIFDATNFEIHCRISTSSYLPPISSLSIYPISIAAHPQKPNQFVVGLTDGSVYVFEPQKPGGDWIKNH 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00448 596 SUPERFAMILY WD40 repeat-like 325 586 IPR036322 GO:0005515
Vian7g00448 596 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Vian7g00448 596 Pfam WD domain, G-beta repeat 405 442 IPR001680 GO:0005515
Vian7g00448 596 Gene3D - 214 467 IPR015943 GO:0005515
Vian7g00448 596 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 233 594 IPR027728 GO:0006355
Vian7g00448 596 ProSiteProfiles Trp-Asp (WD) repeats profile. 410 451 IPR001680 GO:0005515
Vian7g00448 596 SMART WD40_4 360 400 IPR001680 GO:0005515
Vian7g00448 596 SMART WD40_4 403 442 IPR001680 GO:0005515
Vian7g00448 596 SMART WD40_4 320 357 IPR001680 GO:0005515
Vian7g00448 596 SMART WD40_4 492 532 IPR001680 GO:0005515
Vian7g00448 596 SMART WD40_4 550 584 IPR001680 GO:0005515
Vian7g00448 596 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 410 442 - -
Vian7g00448 596 Gene3D - 468 592 IPR015943 GO:0005515
Vian7g00448 596 SMART ctlh 35 93 IPR006595 -
Vian7g00448 596 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 36 93 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00448 Vian-Chr7 11469717 11476023 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00448 - - vun:114195532 728.398