Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00388 ATGCTCTCTCGTTCTCTGAAATCCCCTCATTCCCTCTTCTCCCTCCGTTCATTACCCTGTACTCCAAACCCAATCTCAACCCCAAACCCTATTCCTAACCTAAACCCTTCCTTCCGACCCTCCCCACACCGTCTCTTCTCTTCTTCATGGCTATCCGAACCGGGAAATCCAATCATCCAATGGCCCTCACTACCCAAACCAAACCCTCCTCCAAATTCCAACCCCAACCCTAACCCCGCACCCGACCCTACCTCTCCAAACCTAAACGCCTTCTCCCTCATTTCCAACCTCTTCACGGACCCCTCCGTCTCGCCCGGTCCGGTCCTCCACGCCCAACTCGACCGCTCCGCCATCGAACCGGACCCGGCTTCCCTGCTCGCCGTCTTCGACCACTTTGGCTCGTCCCCCAAGCTCCTACACTCGCTCTTCCTCTGGGCCCAGACGCGACCCGGCTTCAGGCCCGACCCGAACCTCTTTGACGCCGTCGTCAATGCACTCGCAAAGGCAAGGGAATTTGACGTCGCATGGAAACTCGTTCTCGATCACGTCGGTGGAGATGGGGAAGAAGAAAACGAAAGCTTGGTTTCCGTTAAGACCTTTGCCATCATGATTCGACGCTATGCTCGTGCAGGTATGTCCAAACTTGCAATCAGAACTTATGAATTCGCTAAAGATAACAAGTCCATTGTGGATTCTGGCTCAGAAATGAGTTTGTTTGAGATATTGATGGATTCACTTTGTAAAGAAGGGTCGGTGAGGGAAGCTTCAGAGTATTTCCTTTGGAAAAAGGAGTTGGACTTAAGTTGGGTTCCTTCTATTCGGGTTTATAACATAATGTTGAATGGATGGTTTCGATCGAGGAAACTTAAGCAGGGCGAGAGACTTTGGGCAGAGATGAAGAAGGAGAACGTGAGACCAAGTGTTGTGACATATGGTACCCTTGTGGAAGGATATTGCCGGATGCGACGTGTAGAAAAAGCACTCGAAACGGTTGGTGATATGACCAGAGAAGGAATTGCACCAAATGCAATTGTATACAACCCAATAATTGATGCACTAGCAGAAGCTGGAAGATTCAAAGAGGCTTTGGGTATGTTGGAACGATTTCATGTTTTGGAAATTGGCCCTACTGATTCAACATATAATTCTCTCATAAAGGGGTTTTGCAAGGCTGCAGATCTTGTTGGTGCTAGTAAGATTCTTAAAATGATGATAAGCAGGGGCTTCGTCCCAAGTCCCACTACCTATAACTACTTTTTTAGGTACTTTTCAAGATGTGGAAAAGTTGAGGAGGGGATGAACCTGTATGCAAAGTTGATTGAGTCTGGTTATACCCCAGACCGCTTAACTTACCATCTTTTGGTGAAGATGTTATGTGAAGAGGGGAAGTTAGACATGGCAGTTCAAGTTAGCAAGGAAATGAGGCATAATGGATATGATATGGACTTGGCTACCAGCACCATGTTAATTCATTTGCTCTGCAAAATGCAGAGGTTGGAAGAGGCTTTTGCTGAATTTGAGGACATGATAAGAAGGGGTATAGTTCCTCAGTATCTCACTTTCCAGAGAATGAAAGCTGAGTTAAAGAGACAAGGTATGACTGAAATGGCTCAAAAGCTTTGCAAATTAATGTCTTCTGTTCCCTATTCTGGGAACTTGCCAAATACTTATGGTGGAGACAGAGAAGATGCTCTTACACGGAGAAAATCTATAATTCGGAAAGCTAAAGCATTTTCTGATATGCTGAAGGACTGGATCAATTATGGAAAGTTTGAAACACATGGGATTCAGTTTGCATTTATTCATGTTCAAAAAGTTCTGCTGTGCTTCGCTATGCAATTTGCAGGCATGACAACGAGTTCGCGGGTTCAACTGGAGGACCTCAACGATCTTGAAGACGACAAAGAAGAAGCACCACGTGGACCTTCTAAACCGCCTGATTACGATGATGAACAGTGGCAAATTAGGTCTGGTATTGGTCAAGATTGCATCCTCGATTACGAGGAAGAGGAAGACCAATATGACGAGCAGGCTATTGGGAAAGACGATTCAGGTGATCGTGTGTACATGAAGGATGTAAAGGACGATGGAGTTGAGATTAGTTCTAGCAGTGTTTTCCATACCTCGTTTAGAGATTTTGTGCGAGATCCATGTGCAAATCATTTGGCTGCGAGGATTAGGCTGAAGTAG 2190 0.4594 MLSRSLKSPHSLFSLRSLPCTPNPISTPNPIPNLNPSFRPSPHRLFSSSWLSEPGNPIIQWPSLPKPNPPPNSNPNPNPAPDPTSPNLNAFSLISNLFTDPSVSPGPVLHAQLDRSAIEPDPASLLAVFDHFGSSPKLLHSLFLWAQTRPGFRPDPNLFDAVVNALAKAREFDVAWKLVLDHVGGDGEEENESLVSVKTFAIMIRRYARAGMSKLAIRTYEFAKDNKSIVDSGSEMSLFEILMDSLCKEGSVREASEYFLWKKELDLSWVPSIRVYNIMLNGWFRSRKLKQGERLWAEMKKENVRPSVVTYGTLVEGYCRMRRVEKALETVGDMTREGIAPNAIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNSLIKGFCKAADLVGASKILKMMISRGFVPSPTTYNYFFRYFSRCGKVEEGMNLYAKLIESGYTPDRLTYHLLVKMLCEEGKLDMAVQVSKEMRHNGYDMDLATSTMLIHLLCKMQRLEEAFAEFEDMIRRGIVPQYLTFQRMKAELKRQGMTEMAQKLCKLMSSVPYSGNLPNTYGGDREDALTRRKSIIRKAKAFSDMLKDWINYGKFETHGIQFAFIHVQKVLLCFAMQFAGMTTSSRVQLEDLNDLEDDKEEAPRGPSKPPDYDDEQWQIRSGIGQDCILDYEEEEDQYDEQAIGKDDSGDRVYMKDVKDDGVEISSSSVFHTSFRDFVRDPCANHLAARIRLK 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00388 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Vian7g00388 729 MobiDBLite consensus disorder prediction 17 38 - -
Vian7g00388 729 Pfam PPR repeat 241 259 IPR002885 -
Vian7g00388 729 Pfam PPR repeat 345 368 IPR002885 -
Vian7g00388 729 Pfam PPR repeat 485 514 IPR002885 -
Vian7g00388 729 MobiDBLite consensus disorder prediction 631 652 - -
Vian7g00388 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Vian7g00388 729 NCBIfam pentatricopeptide repeat 380 412 IPR002885 -
Vian7g00388 729 NCBIfam pentatricopeptide repeat 309 343 IPR002885 -
Vian7g00388 729 NCBIfam pentatricopeptide repeat 450 482 IPR002885 -
Vian7g00388 729 NCBIfam pentatricopeptide repeat 344 377 IPR002885 -
Vian7g00388 729 NCBIfam pentatricopeptide repeat 415 447 IPR002885 -
Vian7g00388 729 NCBIfam pentatricopeptide repeat 275 307 IPR002885 -
Vian7g00388 729 NCBIfam pentatricopeptide repeat 487 516 IPR002885 -
Vian7g00388 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Vian7g00388 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Vian7g00388 729 Gene3D Tetratricopeptide repeat domain 263 334 IPR011990 GO:0005515
Vian7g00388 729 Gene3D Tetratricopeptide repeat domain 107 262 IPR011990 GO:0005515
Vian7g00388 729 Gene3D Tetratricopeptide repeat domain 405 475 IPR011990 GO:0005515
Vian7g00388 729 Gene3D Tetratricopeptide repeat domain 476 547 IPR011990 GO:0005515
Vian7g00388 729 Gene3D Tetratricopeptide repeat domain 335 404 IPR011990 GO:0005515
Vian7g00388 729 MobiDBLite consensus disorder prediction 60 84 - -
Vian7g00388 729 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 268 544 - -
Vian7g00388 729 Pfam PPR repeat family 379 421 IPR002885 -
Vian7g00388 729 Pfam PPR repeat family 271 320 IPR002885 -
Vian7g00388 729 MobiDBLite consensus disorder prediction 23 37 - -
Vian7g00388 729 MobiDBLite consensus disorder prediction 58 86 - -
Vian7g00388 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Vian7g00388 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Vian7g00388 729 MobiDBLite consensus disorder prediction 631 651 - -
Vian7g00388 729 Pfam PPR repeat 443 475 IPR002885 -
Vian7g00388 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00388 Vian-Chr7 10443616 10448056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00388 128 544 Miscellaneous Gene Families AT4G11690 24.823 1.67e-41 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00388 - - gmx:100793484 961.059