Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00342 ATGCTTCAAACTCACATTAACATTTTCTCACCCTTCACCGCCGCACTCCACTCAAAGCAACTCCGTTCCTCGCGTGTCTGTTCCTCCTCCGCTCCGGTACGCCGTCGTGTTGCAACCACCACAACTCCTGGCGAGGTCAATCTCCGGCGCCTCACTTCGCGCATTGTTCAACTCACCCGCAGGAAACAGCTTCGGCAGATTTTGGATGAGATCGAGGTTGCGAAGAGGCAGTTCGGGAAGCTGAACACGATTGTGATGAACGCGGTGCTGGAGGCTTGTGTCCGTTGCGGTGATATCGATTCAGCTATTAGGATATTCGTAGAGATGAAAAAGGGCGATGGTTGTGGTGTGGATACTGTCACCTATGCCACACTTTTGAAGGGGTTAGGTGAGGCACGGAGGGTCGACGAGGCTTTTGAAATGCTTGAAACTGTAGAAAATGGCACTGCCATGGGAAGTCCAAACTTGTCAGCTCCATTGATATTTGGTCTGCTAAATGCCTTAATCAAAGCAGGAGACTTGCGTCGTGCACATGGTCTCCTTGCCCGATATGGTTTTGTGTTTCAAGAAGGTGGCAAATTTTCAGTATCAGTATACAACATACTAATTAAGGGCTACGTAAACTCAGGTTATCCGCACACTGCAATAAACATGCTGAATGAAATTTTACGTCAAGGTATAATGCCAGACAGGCTCACATATAACACACTAATTCTAGCATGCGTTGAGAGTGGAAAGTTGGACACTGCAATGCAATTTTTTGAGGAAATGAAGGGGAGAGCACAGAAATTTGTCAATGATGATATGTTTCCGGATATTGTTACATATACGACATTGCTTAAGGGTTTTGGGATGGCAAAGGATCTTACTTCAGTTCTAAAAATAGTTCTTGAAATGAAATCTCGTTCAGAATTATACATTGATAGAACGGCTTACACTGCTATAGTTGATGCTTTTCTAACATGTGGCTCAGTTAAAGGTGCTCTTTGTGTTTTTGGAGAAATATTGAAGCAGGCTGGTTTGAATCCAGAGTTGAGGCCAAAGCCTCACCTCTATCTATCCATGATGCGTGCCTTTGCTTTTCTAGGAGATTATGATCTAGTTAAAATTTTGCATAAACGGATTTGGCCAGATTCATCAGGAACCATATTGTTAGTAGCTCAAGAAGAAGCTGATCACCTTCTAATGGAAGCAGCACTCAATGCTGGCCAGATCAATGTTGCCATTAAAACACTTGCTGAGATAATTTCAAGATGGAAGGGCATATCCTGGACAAGTCGTGGAGGCATGGTAGCTTATCGCATTGAGGCCGTGTTGGGATTCTCAAAGTCTTTGTTCAGTCCCTACTTACTTCCTCAGGTTTTACCTTCTCAACCGATTGAGAACTATATGATACGATTTGATGCGACACGGCCACTACAAGGTACCATAAAGCTGAGGAAGGTGGTTATGCGTTTCTTTGATGAAGCAGTTGTTCCTGTTGTGGATGAGTGGGGTAGCTGTATAGGGCTGTTACACCGTGAAGATTGCAAGCAGTTGGATGCCCCACTTTCAACTATGATGAGAAGCCCTCCTCCCAGTGTTACGAGTTCAACATCTGTTGGTCATGTAGTTGATTTAATTTTAGAGAAGCGATACCCTATGGTTGTCATTGTAAATTACACGAACTCATTTGCTACTCCTCCATATAACTCTAGAGCAGTTGGAGTTTTTACACCACAACAATTAAGTAGGTTTATCACACCAGTATCTCAAGTAAAATGGACTGACCTTTGTGAAAGGTAA 1785 0.437 MLQTHINIFSPFTAALHSKQLRSSRVCSSSAPVRRRVATTTTPGEVNLRRLTSRIVQLTRRKQLRQILDEIEVAKRQFGKLNTIVMNAVLEACVRCGDIDSAIRIFVEMKKGDGCGVDTVTYATLLKGLGEARRVDEAFEMLETVENGTAMGSPNLSAPLIFGLLNALIKAGDLRRAHGLLARYGFVFQEGGKFSVSVYNILIKGYVNSGYPHTAINMLNEILRQGIMPDRLTYNTLILACVESGKLDTAMQFFEEMKGRAQKFVNDDMFPDIVTYTTLLKGFGMAKDLTSVLKIVLEMKSRSELYIDRTAYTAIVDAFLTCGSVKGALCVFGEILKQAGLNPELRPKPHLYLSMMRAFAFLGDYDLVKILHKRIWPDSSGTILLVAQEEADHLLMEAALNAGQINVAIKTLAEIISRWKGISWTSRGGMVAYRIEAVLGFSKSLFSPYLLPQVLPSQPIENYMIRFDATRPLQGTIKLRKVVMRFFDEAVVPVVDEWGSCIGLLHREDCKQLDAPLSTMMRSPPPSVTSSTSVGHVVDLILEKRYPMVVIVNYTNSFATPPYNSRAVGVFTPQQLSRFITPVSQVKWTDLCER 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00342 594 Gene3D - 474 579 IPR046342 -
Vian7g00342 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 112 IPR002885 -
Vian7g00342 594 ProSiteProfiles CBS domain profile. 520 591 IPR000644 -
Vian7g00342 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 148 IPR002885 -
Vian7g00342 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Vian7g00342 594 Pfam PPR repeat family 82 129 IPR002885 -
Vian7g00342 594 Pfam PPR repeat family 196 241 IPR002885 -
Vian7g00342 594 Gene3D Tetratricopeptide repeat domain 155 263 IPR011990 GO:0005515
Vian7g00342 594 Gene3D Tetratricopeptide repeat domain 264 437 IPR011990 GO:0005515
Vian7g00342 594 CDD CBS_pair_SF 476 553 - -
Vian7g00342 594 PANTHER OS09G0431600 PROTEIN 17 590 IPR044781 -
Vian7g00342 594 Gene3D Tetratricopeptide repeat domain 19 149 IPR011990 GO:0005515
Vian7g00342 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Vian7g00342 594 NCBIfam pentatricopeptide repeat 86 118 IPR002885 -
Vian7g00342 594 NCBIfam pentatricopeptide repeat 120 143 IPR002885 -
Vian7g00342 594 NCBIfam pentatricopeptide repeat 233 258 IPR002885 -
Vian7g00342 594 NCBIfam pentatricopeptide repeat 274 303 IPR002885 -
Vian7g00342 594 NCBIfam pentatricopeptide repeat 198 230 IPR002885 -
Vian7g00342 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 343 IPR002885 -
Vian7g00342 594 SUPERFAMILY CBS-domain pair 459 556 IPR046342 -
Vian7g00342 594 Pfam Pentatricopeptide repeat domain 262 301 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00342 Vian-Chr7 9635418 9649092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00342 164 465 Miscellaneous Gene Families AT4G11690 25.407 1.85e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00342 - - gmx:100813146 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00342 7 9635418 9649092 Vian7g00342 7 9635418 9649092 ECH