Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00337 ATGTCATCAAAGACAACCATGTATGAGCCAAAAAACATCCTCATAACTGGAGCTGCTGGTTTCATAGCCTCGCATGTCACTACCAAGCTAATCAACAAGTACCCTAGCTACAAGATTGTAGCTCTTGATAAAGTAGACTACTGCTCCACTGTGAGGAATTTGAGGTCATGTATTTCATCACCAAACTTCAAATTTGTTAGGGGTGATATAGCTACTGCAGATATGGTGAATCATATTTTGATAGAAGAGAAAATAGACACCATTATGCATTTTGCTGCTCAAACTCATGTGGACAATTCATTTGGGAACTCCATGGAATTCACCTACAATAATATCTATGGCACTCATGTGCTTCTTGAAGCTTGCAGGGTCACCAATTATGTCAAAAGGTTCATTCATGTCAGCACAGATGAGGTCTATGGTGAAACAGACTTAGAGGATAATATTGGAAACCATGAGACATCTCAGCTTCTACCCACCAATCCTTACTCTGCAACAAAAGCAGGAGCAGAAATGTTGGTCATGGCCTACCACAGGCCTTTCAATGATAAGAGATATTTTCTTGATGATCAAAAGCTCAAACAACTTGGTTGGGAGGAGAGAATTTCCTGGGAGGAAGGACTCAAGAGAACAATTGACTGGTACCAAGAGAATCCTGATTGGTGGGGTGATGTTTCCACTGCTTTAAACCCTCATCCACGTTTCTCAGCCATCAATCTCTCTGATGAGGCTCAATGGTCCTTTCAATATGGATTCTGTAGGCTTGCAAGGTCATTTACCGACATTCGAGGAAGAAACACTTCAGGATTCAAGTTTTTGATATATGGGAGGACTGGTTGGATTGGGGGTTTGTTGGGAAAGCTTTGTGATGAGGACAGAATTGATTGGGAATATGGGAGAGGGAGATTGCAAGATAGAAAATCACTTGAGGAGGACATAAGAAGCGTAAAGCCAACCCATGTGTTGAATGCAGCTGGTGTTACAGGAAGGCCTAATGTTGATTGGTGTGAATCACACAAGGTTGAAACTATAAGGACTAATGTTGTAGGCACTTTAACACTGGCTGATGTTTGCAAGGAACAAAACTTATATATGATGAATTTTGCAACTGGTTGCATATTTGAGTATGACAAGGACCACCCTCTAGGATCAGGCATTGGGTTCAAGGAAGAGGACAAACCAAATTTCATAGGCTCCTTCTATTCCAAGACCAAGGCCATGGTGGAGGACCTTCTAAGAAACTACGCAAATGTCTGCACATTGAGAGTTAGAATGCCAATATCCTCTGATCTTAGCAATCCAAGAAACTTCATCACAAAGATTTCTCGTTACAATAAAGTGGTAAACATACCTAACAGCATGACAGTACTAGATGAACTCTTACCCATATCCATTGAAATGGCTAAGAGGAACTTAAGAGGGATTTGGAACTTCACCAACCCAGGGGTGATTAGCCACAATCAGATATTAGAATTGTATAGGGATTACATAGATCCACAGTTTAAATGGGAGAATTTTGATTTGGAAGAACAAGCAAAGGTAATAGTTGCTCCAAGGAGTAACAATGAAATGGATGCTTCCAAGCTCAAAAAAGAGTTCCCAGAATTGTTGTCCATCAGAGATTCCATTATCAAGTTTGTCTTTGAGCCTAACAAGAAAACTTGA 1665 0.4054 MSSKTTMYEPKNILITGAAGFIASHVTTKLINKYPSYKIVALDKVDYCSTVRNLRSCISSPNFKFVRGDIATADMVNHILIEEKIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRVTNYVKRFIHVSTDEVYGETDLEDNIGNHETSQLLPTNPYSATKAGAEMLVMAYHRPFNDKRYFLDDQKLKQLGWEERISWEEGLKRTIDWYQENPDWWGDVSTALNPHPRFSAINLSDEAQWSFQYGFCRLARSFTDIRGRNTSGFKFLIYGRTGWIGGLLGKLCDEDRIDWEYGRGRLQDRKSLEEDIRSVKPTHVLNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKEQNLYMMNFATGCIFEYDKDHPLGSGIGFKEEDKPNFIGSFYSKTKAMVEDLLRNYANVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVISHNQILELYRDYIDPQFKWENFDLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIRDSIIKFVFEPNKKT 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00337 554 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 226 IPR036291 -
Vian7g00337 554 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 267 546 IPR036291 -
Vian7g00337 554 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 179 234 - -
Vian7g00337 554 Gene3D - 182 220 - -
Vian7g00337 554 Gene3D - 260 554 - -
Vian7g00337 554 Gene3D - 185 205 - -
Vian7g00337 554 Gene3D - 13 181 - -
Vian7g00337 554 Pfam RmlD substrate binding domain 271 441 IPR029903 -
Vian7g00337 554 FunFam UDP-glucose 4,6-dehydratase 13 183 - -
Vian7g00337 554 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 262 554 - -
Vian7g00337 554 CDD dTDP_HR_like_SDR_e 271 543 - -
Vian7g00337 554 Pfam GDP-mannose 4,6 dehydratase 14 179 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00337 Vian-Chr7 9453523 9455772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00337 12 178 Miscellaneous Gene Families AT4G00110 28.824 2.91e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00337 K12450 - gmx:100776241 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00337 7 9453523 9455772 Vian7g00337 7 9453523 9455772 ECH