Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00336 ATGTCTCGCGTGTATGTTGGTAACTTGGATTCACGAGTGACGGAGAGGGATCTTGAAGACGAATTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGAAGGCCACCTGGTTATGCTTTTATTGACTTTGATGATAGGAGAGATGCTCAGGATGCTATTCGTGAATTAGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAATTCTAGGGGTGGAGGTGGTGGCCGCGGTGGCCGTTCTGGTGGTTCTGATTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCCAGGGAATGTCGCTTACGTGGTGGATCAGGAAGACGCCGAAGCCGCAGCCCACCTCGATTTCGTAGGAGCCCTAGCTATGGACGAAGGAGTTACAGTCCTCGTGGGCGATCTCCTAGACGCCGCAGCTTATCACCTCGTGGACGAAGCTACAGCAGGTCACCTCCCTATCGTGGACGGGAGGAGGTTCCATATGCTAATGGAAATGGCCTTAGGGAACGTCGCAGAAGCAGAAGTTGA 537 0.5158 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00336 178 SUPERFAMILY Retrovirus zinc finger-like domains 82 105 IPR036875 GO:0003676|GO:0008270
Vian7g00336 178 SMART rrm1_1 3 69 IPR000504 GO:0003723
Vian7g00336 178 CDD RRM_SRSF3_like 3 71 - -
Vian7g00336 178 MobiDBLite consensus disorder prediction 102 178 - -
Vian7g00336 178 MobiDBLite consensus disorder prediction 66 88 - -
Vian7g00336 178 ProSiteProfiles Zinc finger CCHC-type profile. 89 104 IPR001878 GO:0003676|GO:0008270
Vian7g00336 178 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Vian7g00336 178 SMART c2hcfinal6 89 105 IPR001878 GO:0003676|GO:0008270
Vian7g00336 178 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 158 - -
Vian7g00336 178 SUPERFAMILY RNA-binding domain, RBD 3 84 IPR035979 GO:0003676
Vian7g00336 178 Gene3D - 1 73 IPR012677 -
Vian7g00336 178 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Vian7g00336 178 Pfam Zinc knuckle 89 104 IPR001878 GO:0003676|GO:0008270
Vian7g00336 178 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Vian7g00336 178 FunFam Serine/arginine-rich splicing factor RSZ22A 86 146 - -
Vian7g00336 178 Gene3D - 84 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00336 Vian-Chr7 9445565 9448239 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00336 K12896 - gmx:100790689 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00336 7 9445565 9448239 Vian7g00336 7 9445565 9448239 ECH