Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00295 ATGGAAATGGTTGGCAAGGAGGGTTTGAGAACTGGGGTGTTGAACTTGAGTTTTGGGAAGCTTATGATGGTTGGTGGTGGTGAAAATAGTGGGAAAGGAGTGAACTTGAAAGCTGGGGTGATCACTGATTGGAAAGATATTCCAGTGGAGCTTTTGATGCAAATTTTGTCACTTGTTGATGATCAAACGGTGATCATAGCTTCTGAAGTTTGTCGTGGGTGGAGAGAGGCAATTTGCTTTGGCCTTACCCGGTTGTCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCTCTTACTCCTAAATTTACAAAACTGCAAACTTTAATCCTTCGTCAAGACAAACCCCAACTAGAGGACAATGCTGTTGCGTCTATTGCAAATTTCTGTCATGACCTGCAAATCCTGGACCTCAGCAAAAGTTTCAAGCTCACAGATCGTTCATTGTATGCCATAGCCCTAGGTTGTTGGCATCTTACAAAACTGAACATTAGTGGTTGTTCAGCCTTTAGTGACAGTGCTCTGGCTTACCTAGCCAGTTTATGCAGAGAGCTTAAAGTATTGAATCTATGTGGATGTGTTAAAGCTGCATCCGACACTGCACTACAGGCAATTGGACGTTACTGCAATCAGTTACAGTCTTTGAACCTTGGATGGTGTGAAAATGTCAGTGATGTTGGAGTAACGAGTTTAGCTTATGGCTGCCCTGATCTTCGAACACTTGACTTGTGTGGTTGTGTCCTTATAACAGATGACAGTGTAATTGCCTTGGCAAACAGATGTCCTCATCTTAGGTCCCTTGGACTGTACTACTGCCAAAACATAACAGACAGAGCAATGTATTCTTTGGCACAAAGCAAAGTGAAGAACAGAATGTGGGGATCTGTGAAAGGGGGAAATGATGAGGATGGATTAAGGACTTTGAACATCAGCCAATGCACAGCACTCACCCCTTCTGCTGTGCAGGCTGTGTGTGACTCATCCCCTGCACTCCACACCTGTTCTGGAAGACACTCGCTCATCATGAGTGGTTGTCTCAGTCTGACATCTGTGCACTGTCCATGTGCTGTCCAAGCACACCGTGGTATCAGCACCATTCCTAATACAGCACATTGA 1122 0.4447 MEMVGKEGLRTGVLNLSFGKLMMVGGGENSGKGVNLKAGVITDWKDIPVELLMQILSLVDDQTVIIASEVCRGWREAICFGLTRLSLSWCSKNMNNLVLSLTPKFTKLQTLILRQDKPQLEDNAVASIANFCHDLQILDLSKSFKLTDRSLYAIALGCWHLTKLNISGCSAFSDSALAYLASLCRELKVLNLCGCVKAASDTALQAIGRYCNQLQSLNLGWCENVSDVGVTSLAYGCPDLRTLDLCGCVLITDDSVIALANRCPHLRSLGLYYCQNITDRAMYSLAQSKVKNRMWGSVKGGNDEDGLRTLNISQCTALTPSAVQAVCDSSPALHTCSGRHSLIMSGCLSLTSVHCPCAVQAHRGISTIPNTAH 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00295 373 Pfam Leucine Rich repeat 211 234 IPR001611 GO:0005515
Vian7g00295 373 Pfam Leucine Rich repeat 263 286 IPR001611 GO:0005515
Vian7g00295 373 Pfam Leucine Rich repeat 237 260 IPR001611 GO:0005515
Vian7g00295 373 CDD F-box_AtSKP2-like 44 90 - -
Vian7g00295 373 SUPERFAMILY RNI-like 71 287 - -
Vian7g00295 373 Gene3D Ribonuclease Inhibitor 81 294 IPR032675 -
Vian7g00295 373 Pfam F-box-like 45 78 IPR001810 GO:0005515
Vian7g00295 373 SMART LRR_CC_2 237 262 IPR006553 -
Vian7g00295 373 SMART LRR_CC_2 79 104 IPR006553 -
Vian7g00295 373 SMART LRR_CC_2 184 210 IPR006553 -
Vian7g00295 373 SMART LRR_CC_2 263 288 IPR006553 -
Vian7g00295 373 SMART LRR_CC_2 132 157 IPR006553 -
Vian7g00295 373 SMART LRR_CC_2 158 183 IPR006553 -
Vian7g00295 373 SMART LRR_CC_2 105 131 IPR006553 -
Vian7g00295 373 SMART LRR_CC_2 211 236 IPR006553 -
Vian7g00295 373 SMART LRR_CC_2 304 329 IPR006553 -
Vian7g00295 373 FunFam F-box protein SKP2B 79 297 - -
Vian7g00295 373 Gene3D - 40 80 - -
Vian7g00295 373 PANTHER UNCHARACTERIZED 71 337 - -
Vian7g00295 373 SUPERFAMILY F-box domain 41 79 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00295 Vian-Chr7 8563866 8565929 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00295 K03875 - gmx:100793275 672.93