Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00242 ATGCCACCTTCCCCTTCCTTCCCTTCAGAGAACCGAAACAAATGGCGGAGGAAGAGGAAGCGAGAATCCCACAAACGCCACTCCAAGCGTCATGACGAAGATGACGAAGACAACGATTCCGATGACGATGACAACGACTCCGACGACCAGTTCCGCAGCCCTAATGCCACTCCCAACACCGACTCGCATGTCGAGATCGAGGTCGTCTCGCCCGATGGAGTTCAGATTTCGCGCTTCCCGCCGGCTATCAGGCGCACTGTTATCCGTCCTCATGCAGCGGTCACTGCAATTGCGGCTCTGGAGTTCGGCAGGGGGCACTCGCAGCATGGCGTTCCGGTTCTCGAGAATGTGTCTCACGGCCAGCTTCAGGCGTCCTCGAATGTGTCTGCGGAATGTCTCGGGGGCTTGAGCTTTGTCGCCGCTCCTCCTCCAGTTATGAAAGGCTCCGGCGTTGTTAAGCGTTTTGGCACTAGGGTTCTAGTGGTTCCTATGCATTCAGGATGTGATTGGTTTTCTCCAGCTTCAGTGCATCGACTTGAGAGACAAGCAGTGCCACATTTCTTCTCTGGAAAGTCACCAGATCATACGCCGGAGAAGTACATGGAATGTAGGAATTACATTGTTGCAAGATACATGGAGGACCCAGGAAAGAGGATTACAGTCCCTAGTTGCCAGGTTTTGTCTATTGGTGTTGGTACCGAAGATTTAACTAGAATTGTAAGGTTCCTTGATCAATGGGGAATTATTAATTACTGTGCTCAGGAGCCAAGGCATGAGTATTTGGACAATGATTCTTGCCTGATGGAGGACACTAGTGGTGCACTATGTGTGCCATCAGTGACATTAAGATCCATAGATAGTTTGATTGAGTTTGACAAGCCCAAGTGTAAATTCAAAGCAGATGAAATTTATTCATGTCGAACAATGCACAATACAGATATTTCTGATTTGGATGACACAATAAGAGAGTATCTATCTGAAAACTATTGCCACTATTGTTCTCGTTCTCTTCCTGTTGTATACTACCAATCACAGAAAGAGGTTGATATTTTACTCTGCACTGATTGCTTTCACGATGGGAGATTTGTTGCCGGTCATTCTAGTATAGATTTCATTACAGTGGATTCAACTACAGAATATGGTGATCTAGATGGGGATAGTTGGACTGATCAAGAGACTTTATTGCTGCTTGAAGCAGTGGAGATTTACAATGAGAATTGGAATGAAATTGCTGAGCATGTTGGTACCAAGTCAAAAGCGCAATGCATTCTTCATTTTCTCCGTCTACCTGTAGAAGATGGAAAATTAGAAAACATCAATGTATCAAGTATTTCCTTGTCATCCAATATGAATAATCAAGAGGGTAATGGAAGATTGCATTGTTGCTCAAATGGGGATTCAGCAGGACCCATACATAACAACCAAGATTCTGATAACAGGCTTCCTTTTGCAAATTCTGGAAATCCAGTTATGGCACTGGTTTCCTTTTTAGCCTCTGCTGTTGGACCAAGAGTAGCTGCAACTTGTGCTCACGCAGCATTAGCTGCATTGTCAGAGAATAATTCAGGGAGCGCGTCAGATATAGAAGCTCTGGAAAATGATAACAGGGCAAATTCAGAAAGCATAAATAATAGAGCTGGTGGCCATCATGGAGTGGTTGCAAACTCGAGTCAGAAAAATGAGGACAAGTTAAAAGTACCTGGTTCATGTGCTCAAGATGATGCTGGGTCGACCCTGCTGTCTGCTGAGAAAGTCAAAGATGCTGCCAAAGCAGGCCTCTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCTGATCATGAAGAGCGAGAAATTCAGAGGCTATGTGCTAATATTGTTAATACTAAGTTGAAAAGATTGGAACTGAAGCTGAAGCAGTTTGCAGAAATTGAAACACAGTTGATGAAAGAATGTGAACAAGTTGAGAAGCTGAGGCTGAGGTTTGCTTCTGAACGGTCCCATGTTGTTTCAGCACGTCTTGGAAACGGTGGAACCACTCCTCCAATGAATGTATCAGGTGTTGGTCCTTCCATGATTAATAATAATAACAGCAGTAGGCAGCAAATGATTTCTGCTTCTTCCTCACAGCCTAGCATCTCAGGGTATGGCAACAGCCAACCAGTTCATCCACACATGTCCTTTGTCCCGCGGCCTTCAATGTTTGGATTAGGGCAAAGGTTGCCCCTATCTATGATACAACAATCACAGGCTGTTTCTTCAAATTCGATGTTCAATGGCCCTAGTAATGTGCAGCCTGCTCCTAATCATTCGTTGTCGAGGCCTGTGTCAAGAACTAACTCTGGTTTAGGTTAA 2331 0.4487 MPPSPSFPSENRNKWRRKRKRESHKRHSKRHDEDDEDNDSDDDDNDSDDQFRSPNATPNTDSHVEIEVVSPDGVQISRFPPAIRRTVIRPHAAVTAIAALEFGRGHSQHGVPVLENVSHGQLQASSNVSAECLGGLSFVAAPPPVMKGSGVVKRFGTRVLVVPMHSGCDWFSPASVHRLERQAVPHFFSGKSPDHTPEKYMECRNYIVARYMEDPGKRITVPSCQVLSIGVGTEDLTRIVRFLDQWGIINYCAQEPRHEYLDNDSCLMEDTSGALCVPSVTLRSIDSLIEFDKPKCKFKADEIYSCRTMHNTDISDLDDTIREYLSENYCHYCSRSLPVVYYQSQKEVDILLCTDCFHDGRFVAGHSSIDFITVDSTTEYGDLDGDSWTDQETLLLLEAVEIYNENWNEIAEHVGTKSKAQCILHFLRLPVEDGKLENINVSSISLSSNMNNQEGNGRLHCCSNGDSAGPIHNNQDSDNRLPFANSGNPVMALVSFLASAVGPRVAATCAHAALAALSENNSGSASDIEALENDNRANSESINNRAGGHHGVVANSSQKNEDKLKVPGSCAQDDAGSTLLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNTKLKRLELKLKQFAEIETQLMKECEQVEKLRLRFASERSHVVSARLGNGGTTPPMNVSGVGPSMINNNNSSRQQMISASSSQPSISGYGNSQPVHPHMSFVPRPSMFGLGQRLPLSMIQQSQAVSSNSMFNGPSNVQPAPNHSLSRPVSRTNSGLG 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00242 776 SUPERFAMILY Homeodomain-like 169 251 IPR009057 -
Vian7g00242 776 Coils Coil 514 534 - -
Vian7g00242 776 ProSiteProfiles SANT domain profile. 383 434 IPR017884 -
Vian7g00242 776 Gene3D - 384 434 - -
Vian7g00242 776 MobiDBLite consensus disorder prediction 744 776 - -
Vian7g00242 776 Pfam SWIRM-associated region 1 591 664 IPR032451 -
Vian7g00242 776 SMART sant 384 432 IPR001005 -
Vian7g00242 776 Gene3D - 168 255 IPR036388 -
Vian7g00242 776 PANTHER SWI/SNF COMPLEX-RELATED 65 665 - -
Vian7g00242 776 SUPERFAMILY Homeodomain-like 385 438 IPR009057 -
Vian7g00242 776 MobiDBLite consensus disorder prediction 539 563 - -
Vian7g00242 776 CDD SANT 387 429 IPR001005 -
Vian7g00242 776 Coils Coil 623 643 - -
Vian7g00242 776 Pfam Myb-like DNA-binding domain 387 429 IPR001005 -
Vian7g00242 776 MobiDBLite consensus disorder prediction 539 569 - -
Vian7g00242 776 ProSiteProfiles SWIRM domain profile. 162 260 IPR007526 GO:0005515
Vian7g00242 776 ProSiteProfiles Myb-like domain profile. 380 430 IPR001005 -
Vian7g00242 776 Pfam SWIRM domain 168 251 IPR007526 GO:0005515
Vian7g00242 776 FunFam SWI/SNF complex subunit SMARCC2 isoform C 384 434 - -
Vian7g00242 776 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00242 Vian-Chr7 7420485 7426241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00242 330 426 EF-hand Containing Proteins AT3G07740 32.075 8.82e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00242 K11649 - gmx:732600 1192.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00242 7 7420485 7426241 Vian7g00242 7 7420485 7426241 ECH