Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00227 ATGGCTCAAGTGGGTTCTCTCTCCGCTGAAATCGAGACCTTGAACCATGTACTTTCCCTGGTGGAGGCATTCAGAGCATTCGACGCCGACAACGATGGGCGAATCACGAAGGCAGAGCTTGGTGGAATCTTGGGCTCACTCGGGTACAACGCTAGCGAGCAAGAAGTGAGTGCAATGATGCAAGAAGGTGACAAAAACAGAGATGGGTTTCTGAGCATACACGAGTTCTTGGAGATGAACACGAGAGACTTGGAGGGTGGGAATCTCGCCAGCACTCTCAGCACAGCGTTTGAAGCGTTGGATGAAGATGGGAACGAGATTCTGACCGGGGAAGACCTTCATGGCATCATGCAAAACTTGGGTCTAGACTTATCCCTGGAGAACTGTGTTCATCTTGTAGCTTCTCTTGATGCAGACGGAGATGGAGCTGTGAGCTTGGATGAATTCAGACTCATAGTTGATTCCCTCATCTGA 474 0.5 MAQVGSLSAEIETLNHVLSLVEAFRAFDADNDGRITKAELGGILGSLGYNASEQEVSAMMQEGDKNRDGFLSIHEFLEMNTRDLEGGNLASTLSTAFEALDEDGNEILTGEDLHGIMQNLGLDLSLENCVHLVASLDADGDGAVSLDEFRLIVDSLI 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00227 157 ProSiteProfiles EF-hand calcium-binding domain profile. 51 86 IPR002048 GO:0005509
Vian7g00227 157 SMART efh_1 92 120 IPR002048 GO:0005509
Vian7g00227 157 SMART efh_1 128 156 IPR002048 GO:0005509
Vian7g00227 157 SMART efh_1 19 47 IPR002048 GO:0005509
Vian7g00227 157 SMART efh_1 55 83 IPR002048 GO:0005509
Vian7g00227 157 ProSitePatterns EF-hand calcium-binding domain. 28 40 IPR018247 -
Vian7g00227 157 ProSiteProfiles EF-hand calcium-binding domain profile. 15 50 IPR002048 GO:0005509
Vian7g00227 157 SUPERFAMILY EF-hand 17 153 IPR011992 -
Vian7g00227 157 FunFam Calmodulin-3 9 155 - -
Vian7g00227 157 ProSitePatterns EF-hand calcium-binding domain. 64 76 IPR018247 -
Vian7g00227 157 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Vian7g00227 157 PANTHER CALCIUM BINDING PROTEIN 20 79 - -
Vian7g00227 157 Gene3D - 14 155 - -
Vian7g00227 157 CDD EFh 20 79 IPR002048 GO:0005509
Vian7g00227 157 ProSiteProfiles EF-hand calcium-binding domain profile. 124 157 IPR002048 GO:0005509
Vian7g00227 157 Pfam EF-hand domain pair 93 150 IPR002048 GO:0005509
Vian7g00227 157 Pfam EF-hand domain pair 21 79 IPR002048 GO:0005509
Vian7g00227 157 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00227 Vian-Chr7 6982972 6983445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00227 16 153 EF-hand Containing Proteins AT1G24620 33.333 2.46e-29 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00227 - K02183 gmx:100782291 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00227 7 6982972 6983445 Vian7g00227 7 6982972 6983445 ECH