LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian7g00212	ATGAAGGCCTTGGCCGAAGGATCCTTGGTAGAGAGGTCTGACGACGGCGAAAAGGAGAAGAAGAAGAAGCGCCGATCCAATCGTCGATCCAAGCAAAACACTTCCCCATCTACAGCATCTGAAGTGAATGAGGCCCAGGGAATGTTGCCAGATTCAGGGAAAATTGAACAACCTACTCATGCATCCACTTCCTTGGAGGGTTCATTGAAGCAGGTCAATGTGGGTTCTTCTAATGAGCAAGGACTATCCAATGCATCAAATGTTGCTTTTACATCAATGCCCCCCATGCATATCAATGAGCAAGTGGAGTCTGTTGATTTGCGAATTGTGCCCGTGTATGGTGGAGGAATTGATTCTAAATCATTTTCTGAGCCCGCTGGTTGCAGAGGGTCATCGGGAATTAATAAAAACAAGGACACAGTTCCTTGTAGTCCAATTCGCATTTGTGGCCAGAAATGCATTTTTAGTCCACACTTGTCTTTAGAGGCTGTTGAGAAGGCATTAGAGAAGGGCGATGTTTTTAAAGCTCTCTTTCATGTCAATGCTCACAATCGAGTTGAGGCCTACTGCAAAATTGACGGAGTGCCAACTGATGTTCTCATTAGTGGGATTCCAGCCCAGAATAGAGCTGTGGAAGGTGATATTGTTGCAGTTAAGATTGATCCCTTGCCATTATGGACAAAAATGAAAGGAGCAAATGGGTCTTGTAACAACACTTCAACACCTGAAGATGCTGATCATTGGTCTGGCCTTTGTGGAAGCTATCCTGGTCAAAACAAGGAGGATGCTGATCAACAATCCATCTCCTATAAAAATGATTCTTTGACTGGAAAAGGAATTGTCTGCGATGATAATACCTCCCAGGGTTCTACTAACCATTTAGATCTACTTGGAGGAGCCAACAATGGCAGCATTAATGGACATCACCATGCTACTCCTGATTCCTTAAAGAGCAATTCTTGTAGTGGACAAGTTGAAGTAGTTAATGCTGTGGAAAAGATGTGTTTGTTGGTTAATTCTGTCCCTTCAAAAAGACCAACTGGCAGGGTGGTCTCTATTATCGAGAGATCTCCTCGTCGGGAGGGTATTGTTGGTCATCTTAATGTGAAACAGTGGGCTTCTTATAAGGAAATAACCAAAAAGGACATCAAGAAGAATAAGAACTTGGTTTCTGATAATGATTACATCCAGCTAATACCAACTGATCCAAAGTTTCCTATTATGATGCTTCTTGTTAGAAAGTTACCCGAGTGCATTATGAAAAGGTTGAAAAGTGGTGACATGACAATTGAAATGGATCTGGTAGCTGCACAAATTGATGATTGGGTAGAAGAAAATCCTTTTCCTGAGGCCCACATCTTGCACGTTTTTGGAAGAGGTGGTGAAATTCAGACCCATTTAGATGCAATTTTGTTTCAGAATGCAATCTGTTTTTCTGAATTTCCTCCAGAAGCTATGTCCTGTCTTCCGTGTGTTCCTTGGGAGGTACCTCTGAAAGAAATTCAAAGTAGAAAAGATCTCAGAAATTTGTGCTTATTTACTATTGATCCTTCAACTGCCACTGATCTGGATGATGCTCTGTCAATTGAGAAGTTACCTAATGGGAATTATAGAGTAGGAGTCCACATTGCTGATGTATCATATTTTGTTTTACCTGGCAGAGCCTTAGATAGTGAGGCTCAGTCTAGGTCAACAAGTGTATATATGTTGCAAAGGAAGTTACCTATGTTGCCTTCATTATTATCTGAGAATATTGGGTCACTTAGTCCTGGAGTGGATCGACTTGCTCTTTCTATGCTCCTGGATGTGAATCATGAGGGGGATGTTGTAGACCGTTGGATTGGTCGTTCTGTTATACACTCATGTTGTAAGCTTTCATATGACCATGCCCAGGACATCATTGACAGGAATTTTGATTTTGAAGGTTTAAAGAATACTAAAGATGGCTATCCCAGAGTGTATGGCCATTTTGAATGGCCTGATGTTATTATGTGTTTGAAGAGTCTGTATGAAATTTCAAATGTCTTGAAATGCAAGAGGTTTACTGATGGGGCTCTACGGCTTGAGAACCCCAAAGTTGTTGTCTTGTTTGATGAGAATGGAGTTCCTTATGATAGTAAGCTTTCCGAAAGGAAAGAATCAAATTTTCTTGTAGAGGAATATATGCTTTTGGCCAATAGAGTTGCTGCTGAAGTCATATGTCGAGCTTATCCTGATGCGGCATTGTTACGGAGGCATCCTGAACCTAATATGCGAAAGATGAGAGAATTTATGGCATTTTGTCAGAAGCATGGTTTAGAATTGAACACGACTTCCTCTGGTCAATTCCATTGGTCATTAGAGCAGATCAGGGAAAAGCTCAAGGGTGATCCTGTGCTTTACTATATACTTATTTCTTATGCTGCTAAACCAATGCAGTTGGCTTCTTACTTCTGTAGTGGAGATTTAAAGGATAGTGAAAATGAATGGGGTCATTATGCTTTAGCTGTCCCATTTTACACTCATTTTACATCACCTCTGCGTCGGTATCCTGATATTATTGTTCACCGGACATTACTTGCTACCATAGAGGCTGAGGATTTGTATATGAAGCATCAAAAGGCTTTGCAGGTTCATAAGGAAATGGATGTTGCGAAAAGATGTTTCACTGGTATCAATTTTGATAGAAGTGCTGCAGAATCCATCAAGGGAAGGGAAGCACTATCAGCTGCAGCTGTGAAGTATAGTGTTCCAGGTGGTGAAATACTTGCAAATATTGCTGCTCATTGCAATGAGAGAAAGCTAGCTAGTAGAAATGTTAAGGATGCCTGTGATAAACTTTACATATGGTTTCTCCTGAAGAAAAAGGAGGTCTTATTGTCAGAAGCTAGAGTTATGGGACTTGGCCCAAGATTCATGTCAATTTACATTCAAAAGCTAGCTATTGAGCGACGCATATATTATGATGATGTGGAAGGCTTGACTGCAGAATGGCTTGAAACAACATCCACGCTGGTGCTCAACATGTCAACCACTAATAGGTGTACATTTAGGAGGGGCTGGTCTAACAAGTGGAGGGCGATTGAAGAAGTTGCACTGCTTTCTTGTCCATATAACCTGAAAATTACCACGGATAATTCTAACCAGAGTGATGTAATAAAAGTGGATGCGGAGACTGAAATTGACCCCTTAGTTTTTCCGCTCACAGTGCATGTTCTTTCAACAATTCCAGTGGCTCTTCATGCTGTTGGTGGTGATGATGGGCCCCTTGATATTGGAGTAAGGCTCTACATGAGCTCCTATTTTGGGTGA	3291	0.4132	MKALAEGSLVERSDDGEKEKKKKRRSNRRSKQNTSPSTASEVNEAQGMLPDSGKIEQPTHASTSLEGSLKQVNVGSSNEQGLSNASNVAFTSMPPMHINEQVESVDLRIVPVYGGGIDSKSFSEPAGCRGSSGINKNKDTVPCSPIRICGQKCIFSPHLSLEAVEKALEKGDVFKALFHVNAHNRVEAYCKIDGVPTDVLISGIPAQNRAVEGDIVAVKIDPLPLWTKMKGANGSCNNTSTPEDADHWSGLCGSYPGQNKEDADQQSISYKNDSLTGKGIVCDDNTSQGSTNHLDLLGGANNGSINGHHHATPDSLKSNSCSGQVEVVNAVEKMCLLVNSVPSKRPTGRVVSIIERSPRREGIVGHLNVKQWASYKEITKKDIKKNKNLVSDNDYIQLIPTDPKFPIMMLLVRKLPECIMKRLKSGDMTIEMDLVAAQIDDWVEENPFPEAHILHVFGRGGEIQTHLDAILFQNAICFSEFPPEAMSCLPCVPWEVPLKEIQSRKDLRNLCLFTIDPSTATDLDDALSIEKLPNGNYRVGVHIADVSYFVLPGRALDSEAQSRSTSVYMLQRKLPMLPSLLSENIGSLSPGVDRLALSMLLDVNHEGDVVDRWIGRSVIHSCCKLSYDHAQDIIDRNFDFEGLKNTKDGYPRVYGHFEWPDVIMCLKSLYEISNVLKCKRFTDGALRLENPKVVVLFDENGVPYDSKLSERKESNFLVEEYMLLANRVAAEVICRAYPDAALLRRHPEPNMRKMREFMAFCQKHGLELNTTSSGQFHWSLEQIREKLKGDPVLYYILISYAAKPMQLASYFCSGDLKDSENEWGHYALAVPFYTHFTSPLRRYPDIIVHRTLLATIEAEDLYMKHQKALQVHKEMDVAKRCFTGINFDRSAAESIKGREALSAAAVKYSVPGGEILANIAAHCNERKLASRNVKDACDKLYIWFLLKKKEVLLSEARVMGLGPRFMSIYIQKLAIERRIYYDDVEGLTAEWLETTSTLVLNMSTTNRCTFRRGWSNKWRAIEEVALLSCPYNLKITTDNSNQSDVIKVDAETEIDPLVFPLTVHVLSTIPVALHAVGGDDGPLDIGVRLYMSSYFG	1096

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian7g00212	1096	Gene3D	-	379	462	-	-
	Vian7g00212	1096	SMART	RNB_2	504	858	IPR001900	GO:0003723\|GO:0004540
	Vian7g00212	1096	PANTHER	RIBONUCLEASE	21	1093	-	-
	Vian7g00212	1096	Hamap	DIS3-like exonuclease 2 [DIS3L2].	11	1071	IPR028591	GO:0000175\|GO:0034427
	Vian7g00212	1096	MobiDBLite	consensus disorder prediction	1	64	-	-
	Vian7g00212	1096	SUPERFAMILY	Nucleic acid-binding proteins	464	948	IPR012340	-
	Vian7g00212	1096	Pfam	RNB domain	504	856	IPR001900	GO:0003723\|GO:0004540
	Vian7g00212	1096	FunFam	DIS3-like exonuclease 2	145	248	-	-
	Vian7g00212	1096	FunFam	DIS3-like exonuclease 2	380	462	-	-
	Vian7g00212	1096	SUPERFAMILY	Nucleic acid-binding proteins	152	356	IPR012340	-
	Vian7g00212	1096	MobiDBLite	consensus disorder prediction	7	21	-	-
	Vian7g00212	1096	ProSitePatterns	Ribonuclease II family signature.	825	849	IPR022966	-
	Vian7g00212	1096	MobiDBLite	consensus disorder prediction	31	45	-	-
	Vian7g00212	1096	Pfam	Dis3-like cold-shock domain 2 (CSD2)	395	474	IPR041505	-
	Vian7g00212	1096	SUPERFAMILY	Nucleic acid-binding proteins	347	476	IPR012340	-
	Vian7g00212	1096	Gene3D	-	149	246	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian7g00212	Vian-Chr7	6599147	6605175	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian7g00212	K18758		-	gmx:100817387	1774.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian7g00212	7	6599147	6605175	Vian7g00212	7	6599147	6605175	ECH