Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00077 ATGCGTGTCACTATCGATCTAGGGTTTCGGAGCCTGGTCCTCGTCGTGGTGGTCTGCCTCTTCTTGCCGGCGATCAGCTTCGTGCTCCGTCGCAGGTTGCGGCGCACGGAGGCCAGGGCGGAGGAGATCAAGCGGCTGCTTGTTCTCGCCGAGGAGGAGACCGTTAGGGCCGAGACCGAGGCTTCGTATTACCGGTACGAGGTCGTTTCGCTCCCGAAGAACAAAGTATGCGCCGTGTGTTTCTCTCCCACCACTACACGTTGCGCTAGGTGCAAAGCGGTTCACTACTGTTCTGGAAAGTGCCAAATTGTTCATTGGCGTCAAGGTCACAAAGAAGAATGCCATCCTGCCATCGCAACTTGCCAGACTGATGACTTGGTTAGTGATCTTGGAAAGAACGTGGCAGATCCTGATGCTCGCAGAATCCATGAACAGAGTTCTCAGACTGAAAGCACAAAGTATGCAACAGCATTTGAGAATCCCTTGTTGTCTGAAAAGAGCCGTTCTAATATTTCACGAGCAAATGATGATAGTGCAAGAGATGACTCTCTTCAAGAGGGAAATGTTACAGGCTCTAATTCTGAATTATCCAGTAATTCATTTTCTGGATTCTCAGCGTCCACTGGTGCCAGTGAATCATCTGATGATTCTTCTGTCTGTGAGAGTGTCATCTCAAATGAACACGAGAGATCTGAGGGACATATGTTTTTGAATCACGCCCATGACACTTCTGATACCACTTCAAGTCATAGCAACAATGATGAATCCATTCCATTATCACCTAAGTTTGTTAGTTTGGTCGATTCAGTAGATGATTATCCAGAAATGCATAAATTATATCAAGTTACACCTGGTTCGGGAAAAGAAGAGAGTAAGCTCACATCATCAGATGGCAGTTCTGGTTTGCGTATGTGGAAAAAATCAACAATTGAGCCTTCCACAGTGTCTTCTGGATTCTGGAATGAAACACTTGATTCAACAAGGTTAAAAGATGACTCTAATAGTGACCATCGTCCATCCCAGGGTGATTCTTCTCCAAAGTCAGTTGAGAACAATATGCCAGGATCATCATCTTCAGAGAAAAATGTAGTTGATTCTTCAGGTTGTGCCGATGCTGTGAGCGTCCATAATTTTCAAACACTTGGTTCTAGGGTATCAAATCATGTTATCAACCCTAGTAGCACCTTGGAGTTAGCTGAAAGTAGACGTCAATCATGTGCATTTGCTGATACAAAATGTGGGAATAAAGGCATCCAGTCTGGAACTGGTACTTCATCTAGGGTTGTTGGCTCTCCAAAGTCTAAGAATGACCTAGAAACATCTGTCCTGAAAGCTTCTGATCAGTTTAGAGGATCAAAATCATCTAAACCTTTCCCATTAGCATTTGGGAGTAATATCACTGGAAAATATAGTGACAAGGGTCATTTTCCATATGATTTGTTTGTCAAACTTTTTAACTTGAACAGAGTGCAGTTGCAACCATTTGGTCTTGTAAACTGTGGAAACAGCTGTTATGCTAATGCTGTACTCCAGTGCTTGGCTTTTACACCACCCCTGACTGCTTATTTACTTCAAGGACTTCATTCTAAATCATGTGCAAATAAAAAGTGGTGTTTCATCTGTGAGTTTGAAAGTTTGATTTTGAAGTCAAAAGACACAAAATCTCCCATCTCACCTGTGGGCTTACTCTCTCAACTACAGAATATTGGGAGTCAACTTGGTAATGGAAGAGAAGAAGATGCACATGAGTTTCTAAGGCTTGCTGTTGAGACAATGCAATCTGTTTGCCTTATGGATTCTGGGGATAAAATATCAGACTCATTAAAAGAGGAAACCAATTTAATGGGCCTAACTTTTGGAGGATATCTTCAATCAAAGGTAAAATGCATGAAGTGTGGAGGGAAATCTGAGCGTCAAGAAAGGATGATGGATCTGACTGTTGAGATAGATGGGGAGATAGCAACCCTGGAGGATGCCCTTCGACAGTTTACAACTGCTGAGACTCTGGATGGGGAAAACAAGTACAACTGTGTCAGGTGTAAGTCTTACGAGAACGCCAAGAAGAGGATGACAGTTTTGGAGGCACCTAATGTTCTTACAATTGCATTAAAGAGATTTAAGTCAGGAAAATTTGGGAAGCTCAATAAACCTATCCAGTTTCCTGAAATACTTGACTTGGCACCTTTTATAAGTGGGACTAGTGATTTGGCTATATACAGGCTATATGGGGTAGTTGTTCACCTGGATACTATGAATACTACTTTTTCGGGTCACTATGTATGCTATGTGAAGAATTTTCAAAGCAGGTGGTTCAAGGTCGATGATAGCGTGGTGACATCTGTTGAATTGGAAAGCGTCTTGGCAAAAGGAGCATACATGCTTTTCTATGCAAGGTGCTCACCTAGGGCCCCTAGATTAATCAGGAACAGTATAGTATCTTCAGATTTAAAATGGAAACTCAATGGAAAAACTGCCGTAGTGAAGGGACGACTATCTACTGTTTCTGGTGCTGGAGTTAATTTGACTTCTGTAGATGGTTCACCTTCCTTTGATGCTATCTATTCAAAGTTTCTCCGCCAGAGAAGGATTTTGGAAGAAGATTCATCAAGTGATAATTCATCCCTTATAAGCAGCAATTCTGACGAAGGTTCTTGCAGTACAGATAGCACGAGTGATTCAACCAGTACGGATGACTTTGCTGATTATATTTTTGGTGATTTGGGACGCGGCTCAGGCGGCACGTTTAGAAATTCAGACTCAAAGATTTCCCCTTCATTGTCGTCTTCTCCCCACTCTAGATATTTTCCCTCTTGTGATATTTGA 2823 0.4254 MRVTIDLGFRSLVLVVVVCLFLPAISFVLRRRLRRTEARAEEIKRLLVLAEEETVRAETEASYYRYEVVSLPKNKVCAVCFSPTTTRCARCKAVHYCSGKCQIVHWRQGHKEECHPAIATCQTDDLVSDLGKNVADPDARRIHEQSSQTESTKYATAFENPLLSEKSRSNISRANDDSARDDSLQEGNVTGSNSELSSNSFSGFSASTGASESSDDSSVCESVISNEHERSEGHMFLNHAHDTSDTTSSHSNNDESIPLSPKFVSLVDSVDDYPEMHKLYQVTPGSGKEESKLTSSDGSSGLRMWKKSTIEPSTVSSGFWNETLDSTRLKDDSNSDHRPSQGDSSPKSVENNMPGSSSSEKNVVDSSGCADAVSVHNFQTLGSRVSNHVINPSSTLELAESRRQSCAFADTKCGNKGIQSGTGTSSRVVGSPKSKNDLETSVLKASDQFRGSKSSKPFPLAFGSNITGKYSDKGHFPYDLFVKLFNLNRVQLQPFGLVNCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCANKKWCFICEFESLILKSKDTKSPISPVGLLSQLQNIGSQLGNGREEDAHEFLRLAVETMQSVCLMDSGDKISDSLKEETNLMGLTFGGYLQSKVKCMKCGGKSERQERMMDLTVEIDGEIATLEDALRQFTTAETLDGENKYNCVRCKSYENAKKRMTVLEAPNVLTIALKRFKSGKFGKLNKPIQFPEILDLAPFISGTSDLAIYRLYGVVVHLDTMNTTFSGHYVCYVKNFQSRWFKVDDSVVTSVELESVLAKGAYMLFYARCSPRAPRLIRNSIVSSDLKWKLNGKTAVVKGRLSTVSGAGVNLTSVDGSPSFDAIYSKFLRQRRILEEDSSSDNSSLISSNSDEGSCSTDSTSDSTSTDDFADYIFGDLGRGSGGTFRNSDSKISPSLSSSPHSRYFPSCDI 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00077 940 MobiDBLite consensus disorder prediction 869 897 - -
Vian7g00077 940 SUPERFAMILY Cysteine proteinases 492 802 IPR038765 -
Vian7g00077 940 MobiDBLite consensus disorder prediction 911 940 - -
Vian7g00077 940 MobiDBLite consensus disorder prediction 287 304 - -
Vian7g00077 940 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 208 802 - -
Vian7g00077 940 MobiDBLite consensus disorder prediction 913 934 - -
Vian7g00077 940 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 496 511 IPR018200 GO:0004843|GO:0006511
Vian7g00077 940 Gene3D - 68 120 - -
Vian7g00077 940 ProSiteProfiles Zinc finger MYND-type profile. 77 114 IPR002893 -
Vian7g00077 940 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 495 799 IPR028889 -
Vian7g00077 940 SUPERFAMILY HIT/MYND zinc finger-like 73 117 - -
Vian7g00077 940 MobiDBLite consensus disorder prediction 326 365 - -
Vian7g00077 940 MobiDBLite consensus disorder prediction 240 259 - -
Vian7g00077 940 MobiDBLite consensus disorder prediction 148 169 - -
Vian7g00077 940 MobiDBLite consensus disorder prediction 280 304 - -
Vian7g00077 940 Coils Coil 33 60 - -
Vian7g00077 940 Pfam MYND finger 77 114 IPR002893 -
Vian7g00077 940 MobiDBLite consensus disorder prediction 339 365 - -
Vian7g00077 940 MobiDBLite consensus disorder prediction 184 221 - -
Vian7g00077 940 FunFam Ubiquitin carboxyl-terminal hydrolase 15 489 807 - -
Vian7g00077 940 Gene3D Cysteine proteinases 488 808 - -
Vian7g00077 940 MobiDBLite consensus disorder prediction 239 259 - -
Vian7g00077 940 MobiDBLite consensus disorder prediction 137 222 - -
Vian7g00077 940 ProSitePatterns Zinc finger MYND-type signature. 77 114 IPR002893 -
Vian7g00077 940 Pfam Ubiquitin carboxyl-terminal hydrolase 495 796 IPR001394 GO:0004843|GO:0016579
Vian7g00077 940 FunFam Ubiquitin carboxyl-terminal hydrolase 15 68 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00077 Vian-Chr7 3215085 3222260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00077 401 803 Miscellaneous Gene Families AT4G31670 45.721 4.01e-120 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00077 K11855 - gmx:100782303 1263.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00077 7 3215085 3222260 Vian7g00077 7 3215085 3222260 ECH