Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01949 ATGGCTTCTTTCAATCTCTCTTATTCTTCCTCACCAGCCCTCTCATGTCCCCGGGCAAGCAAACACTTCAAATTGTTCAATGATGTGCCTTTTGTCCGAATGAATTCTAAATTTCCCTCAAGCGATATTGCTGTTAGTAGAATTAAAGCTGGAGGAGGAGACCTACTTTCCTATCCAAAGAGCAATGACATTGTGATAGGCAAAAATCTGGTTGGAGATGAATCTGTTCGAATTGATGTACAATATAATGGAACATCAACTGTAGACACAGGGATAACAAGCAATGTTTTCTCTGTTGATGGTGATGAATTCGATCTGGACAGCCCAACAGCAGGTTTTGCTTCCATCCCCGAGGCCATTGAAGACATTCGGCAGGGAAAGATGGTAGTGGTCGTCGACGATGAGGATCGAGAAAATGAAGGAGACTTGATAATGGCAGCACAGTTGGCAACACCCGAGGCAATGGCCTTTATTGTGAAACATGGAACTGGGATAGTTTGTGTAAGCATGAAAGAGGAAGATTTAGATAGATTGGAACTTCCTTTGATGGTAAACAGTAAGGATAATGATGAGAAGCTTCGTACGGCATTCACTGTGACAGTGGATGCTAAACATGGTACCAGCACCGGTGTGTCAGCTCAAGATAGGGCAACAACAGTCTTAGCCCTTGCATCTAGAGATTCTACTCCAGGTGATTTCAACCGCCCAGGCCATATTTTCCCACTAAAATACAGGGAAGGTGGTGTCTTGAAGAGAGCTGGACACACAGAAGCTTCGGTTGATCTTGCTGTACTTGCTGGCATGGATCCAGTGGCAGTTCTGTGTGAGATTGTAGATGACGATGGGTCCATGGCCAGACTGCCAAAACTTCGCCAGTTCGCAGAGCGTGAAAATTTGAAAGTCGTATCTATCGCTGACTTAATAAGATATAGAAGAAAAAGGGATAAGCTGGTGGATCGCGCTTCTGCTGCACGGATACCTACAATGTGGGGACCATTCACAGCGTACTGTTACAGGTCCCTTTTGGACGGAATAGAGCATATTGCAATGGTTAAGGGTGAGATTGGAGATGGAGAAGATGTCGTTGTGAGGGTACACTCGGAGTGTCTAACCGGAGACATATTTGGATCTGCGAGATGCGACTGCGGAAATCAGCTTGCACTCTCAATGCAACAGATTGAAGCTGCTGGTAGAGGTGTGCTGGTATATCTCCGTGGACACGAAGGACGGGGTATTGGATTGGGCCACAAGCTTCGTGCTTATAACCTACAGGATGACGGACGTGATACAGTAGAAGCCAACGAGGAGTTAGGATTGCCTGTTGACTCCAGGGAATACGGCATTGGCGCTCAGATATTAAGGGACTTGGGTGTTAGATCTATGAAGCTGATGACCAACAATCCAGCAAAATATGTCGGGCTCAAAGGTTACGGTTTGACAGTTTCGGGTAGGATCCCAATATTATCTCTCATTACTTCAGAGAACAAGAGATATTTAGAGACCAAACGTATGAAAATGGGTCATATATATGGCATGGAAAGTGGAAACAAGGTTGATGATGACTCTAGTACTGTTACTGCCCCATAG 1587 0.4524 MASFNLSYSSSPALSCPRASKHFKLFNDVPFVRMNSKFPSSDIAVSRIKAGGGDLLSYPKSNDIVIGKNLVGDESVRIDVQYNGTSTVDTGITSNVFSVDGDEFDLDSPTAGFASIPEAIEDIRQGKMVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKEEDLDRLELPLMVNSKDNDEKLRTAFTVTVDAKHGTSTGVSAQDRATTVLALASRDSTPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGMDPVAVLCEIVDDDGSMARLPKLRQFAERENLKVVSIADLIRYRRKRDKLVDRASAARIPTMWGPFTAYCYRSLLDGIEHIAMVKGEIGDGEDVVVRVHSECLTGDIFGSARCDCGNQLALSMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLTVSGRIPILSLITSENKRYLETKRMKMGHIYGMESGNKVDDDSSTVTAP 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01949 528 Gene3D GTP cyclohydrolase II 318 488 IPR036144 -
Vian6g01949 528 Pfam GTP cyclohydrolase II 322 486 IPR032677 -
Vian6g01949 528 PANTHER GTP CYCLOHYDROLASE II-RELATED 112 511 - -
Vian6g01949 528 FunFam Riboflavin biosynthesis protein RibBA 318 489 - -
Vian6g01949 528 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 104 317 - -
Vian6g01949 528 Hamap GTP cyclohydrolase-2 [ribA]. 316 512 IPR000926 GO:0003935|GO:0009231
Vian6g01949 528 SUPERFAMILY RibA-like 316 487 IPR036144 -
Vian6g01949 528 NCBIfam GTP cyclohydrolase II 321 509 IPR000926 GO:0003935|GO:0009231
Vian6g01949 528 CDD GTP_cyclohydro2 317 509 IPR000926 GO:0003935|GO:0009231
Vian6g01949 528 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 118 310 IPR000422 GO:0008686|GO:0009231
Vian6g01949 528 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 114 311 IPR000422 GO:0008686|GO:0009231
Vian6g01949 528 Gene3D DHBP synthase 102 317 - -
Vian6g01949 528 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 111 315 IPR000422 GO:0008686|GO:0009231
Vian6g01949 528 SUPERFAMILY YrdC/RibB 112 314 IPR017945 -
Vian6g01949 528 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 112 508 IPR016299 GO:0009231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01949 Vian-Chr6 36669185 36672577 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01949 K14652 - gmx:100801046 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03009 1 49583278 49587450 Vian6g01949 6 36669185 36672577 PCT