Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01912 ATGGCTTCCGCCGTCCTTGCTAACCGGAACGAACCGAATTGGCCACAGCATAGAGGCGGTGGAGCTGGATTCATGGGAAAAGTACCTTTTTCTAACCCTAACCCTAATTCTAATCCTAAATTAGCGAATAGCAAAAGGACCCAATCGGCGTCCGACGATGCTTCCTCTATCAACAGGAGATCGAACGACGCTGGCGTAAGTCACTCTCAATACGTGTGCTTCAGCTTATCTACGTGCACAAAGAAGGAGCTCAACGACATCAAAAATCGCCTTGTGTCGGAGCTTGAACAGGTTCGCAAGTGCAGAAATCGAATCGAATCCGGCGAGTTACAGACCGGGCAGAGCTCCAACGGCCACCCGAAGAAACCGTCAAGCAAAAAGGTTTCCGGCAACAAACGACCCTTACCGTTGAATTCCTTTAAGGAATTGAAACGGTCGCATTCGGAAGTTGGGAACACGATGAAGGTTTGCTCGCAGATTTTGCAGAAGCTGATGAAACACAAACATGGGTGGATCTTCAATGTTCCTGTTGATGTTGTCGGAATGGGACTCCACGATTACTATGATATAATTAAGCAACCCATGGATCTGGGTACTGTGAAGTCGAATCTCTCTAAGAACGTGTACTCCACGCCTTCGGATTTCGCTTCTGATGTGAGGTTAACTTTCAACAATGCACTGACTTATAACCCTAAGGGCCATGACGTATACACCATGGCGGAGCAGCTTCTGGCAAGGTTTGAGGAGCTGTATCGGCCGATGCGCGACAAATCTGAAGGTTGGATTAGACAAGATCAAGATTACGATGAGGAGTTGCAGGCTAGTTCTTGGAGCCACGTGGAGCCGGAGAGGGTGAAAAAGAAGGAGAATCCAATCCCTCCTGCGAAATTGCAACAAGAGCCTCCCCAGCCCCCTGCGAGTTCATCAAACCCCCCATTGTTGCAGTCTCCTGTGCGCACGCCATCTCCAATGCGAGCCCCTCCTGTGAAGCCTTTGAAACAACCGAAGCCAAAGGCTAAGGATCCCAACAAGAGGGAGATGAGTCTGGAGGAGAAACACAAATTGGGGTTAGGGTTGCAGAGTTTGCCAGCAGAGAAAATGGAACAGGTGGTGCAGATCATAAGGAGGAGGAACGGGCATTTGAAGCAGGATGGGGATGAGATCGAGCTAGATATTGAGGCTGTTGACACAGAGACCCTTTGGGAACTTGATCGGTTAGTGACTAATTATAAGAAGATGGTTAGCAAGATTAAGAGGCAGGCATTGATGGGCAATATTAACAACAACAATGAGCAGTCTAGCAGAGGGAACGGGGAATTGGCTGCTAGCGAGAAGGTTGATGGGGGTGCAGTTGAGGTGAAGAAGCCGAAGAAAGTAGAAGCAGGGGATGAGGATATTGACATTGGAGACGAGATGCCAATGAGTATGTTTCCCCCTGTGGAGATTGAGAAAGATAAAGATGTTGGTGGAGGGCATGCAAGCAGTAGTTCTAGTAGCTCTGGCAGTTCAAGCAGTGATTCATCATCGTCAAGTGATTCAGATTCAGGGAGTTCCTCGGGGAGCGATTCTGAAGCAGACAATGGGCATTTGTAG 1593 0.4865 MASAVLANRNEPNWPQHRGGGAGFMGKVPFSNPNPNSNPKLANSKRTQSASDDASSINRRSNDAGVSHSQYVCFSLSTCTKKELNDIKNRLVSELEQVRKCRNRIESGELQTGQSSNGHPKKPSSKKVSGNKRPLPLNSFKELKRSHSEVGNTMKVCSQILQKLMKHKHGWIFNVPVDVVGMGLHDYYDIIKQPMDLGTVKSNLSKNVYSTPSDFASDVRLTFNNALTYNPKGHDVYTMAEQLLARFEELYRPMRDKSEGWIRQDQDYDEELQASSWSHVEPERVKKKENPIPPAKLQQEPPQPPASSSNPPLLQSPVRTPSPMRAPPVKPLKQPKPKAKDPNKREMSLEEKHKLGLGLQSLPAEKMEQVVQIIRRRNGHLKQDGDEIELDIEAVDTETLWELDRLVTNYKKMVSKIKRQALMGNINNNNEQSSRGNGELAASEKVDGGAVEVKKPKKVEAGDEDIDIGDEMPMSMFPPVEIEKDKDVGGGHASSSSSSSGSSSSDSSSSSDSDSGSSSGSDSEADNGHL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01912 530 Gene3D - 340 417 IPR038336 -
Vian6g01912 530 ProSiteProfiles NET domain profile. 337 418 IPR027353 -
Vian6g01912 530 ProSiteProfiles Bromodomain profile. 165 237 IPR001487 GO:0005515
Vian6g01912 530 MobiDBLite consensus disorder prediction 273 348 - -
Vian6g01912 530 Coils Coil 84 104 - -
Vian6g01912 530 PRINTS Bromodomain signature 168 181 IPR001487 GO:0005515
Vian6g01912 530 PRINTS Bromodomain signature 184 200 IPR001487 GO:0005515
Vian6g01912 530 PRINTS Bromodomain signature 200 218 IPR001487 GO:0005515
Vian6g01912 530 PRINTS Bromodomain signature 218 237 IPR001487 GO:0005515
Vian6g01912 530 MobiDBLite consensus disorder prediction 448 464 - -
Vian6g01912 530 PANTHER OSJNBA0053K19.4 PROTEIN 65 523 - -
Vian6g01912 530 MobiDBLite consensus disorder prediction 106 137 - -
Vian6g01912 530 MobiDBLite consensus disorder prediction 107 124 - -
Vian6g01912 530 Gene3D - 144 266 IPR036427 GO:0005515
Vian6g01912 530 Pfam Bromodomain 157 241 IPR001487 GO:0005515
Vian6g01912 530 CDD Bromo_plant1 153 251 IPR037377 -
Vian6g01912 530 SMART bromo_6 146 256 IPR001487 GO:0005515
Vian6g01912 530 MobiDBLite consensus disorder prediction 491 530 - -
Vian6g01912 530 MobiDBLite consensus disorder prediction 295 333 - -
Vian6g01912 530 MobiDBLite consensus disorder prediction 334 348 - -
Vian6g01912 530 Pfam Bromodomain extra-terminal - transcription regulation 346 408 IPR027353 -
Vian6g01912 530 SUPERFAMILY Bromodomain 148 258 IPR036427 GO:0005515
Vian6g01912 530 MobiDBLite consensus disorder prediction 427 530 - -
Vian6g01912 530 MobiDBLite consensus disorder prediction 30 62 - -
Vian6g01912 530 MobiDBLite consensus disorder prediction 273 293 - -
Vian6g01912 530 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01912 Vian-Chr6 36346998 36348787 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01912 - - gmx:100802622 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01912 6 36346998 36348787 Vian6g01912 6 36346998 36348787 ECH