Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01905 ATGGGGTTTGGGAAGGAGAAAGATGTGGGAGGAGAAGAAAGGAGAAAATTTGAAAAAATGGGTTTGGAACAGATTGGAGTTGAAGAGGTTCTCAGAATGGTGAAGGTCATGGCTATGCTTTTGTGTTCACAGGTCGCACGCTTGGTTCCTTTCTTCGTCTCGTCTCCCTCACATCGCACACGCTTTCGCTTTCTCCCTCACACTCTTTCTCAGGCTTTGCAAGTCTCAGTTTCCGGTTGGCAGGGTGTTGGTAGTAAGGATTATAGTAGTGGTTATAGTGGTGGTTGGTGGCCATGTTGGGGTGAGGAATTAACAACTTCAGGGTGTTATTTAGGAGTTTGTGATCTGAGCATAAAGATGGAGCTGAGTAGCATCAAAGATGCATTTGATCGTGTAGCCAAAAAGCAAAAATTATCCTCTTCCAAGTCTCAGGAAGTTGTTGACCAGGTGGGGCGTGAAATTGAGCAGGCATTGGCAGCAATTCAGTCATCCCGTGACCTCTCTTCTCCTGCTGACCAGAAATCCGTTCTCACAGAACTTAAGTTCAAGATTAATGCTATTGGACCATTTCAACAGTTGGAAGGTTCAAATAAGGAAGTGAACGGAAGTATTATCAAGTATCAAAGGCCCCTTGAAAAATTGTTAAATCCTGACATATCTAAGGCATACAGAAATGTGGACTTTGATACTCGTATTATCAATCAGATCATTGCAAACCACTTTTACCGTCAAGGTTTATTTGATCTTGGAGATAGCCTCGTAAATGAGGCTGGAGAGCCTGATGCAACTGCACTTAGATCTCAATTTTTAGAAATGCATCAGATTATTGGAGCTATGAGGGAGAAAAACCTTCAGCCTGCTCTGACATGGGTCTCTGCTAATCGAGAAAAACTTGATCATATTGGTTCTAATCTTGAGCTTAAGATTCACAGACTGCAGTTTGTAGAGGTCCTGCAAAATGGGACACGAGCTGATGCCTTAAAATACGCCCGAACTTATCTTGCTCCTTTTGCTTCCCTCAACAAGGACGAGTTCCCAAAGCTCATGGGTTGCCTCTTGTATGCAGGAAGGCTAGAGAGCTCCCCTTATTCTGAGTTGATGTCCCCAATTCATTGGGAGATGACAACTGAAGAGCTCGCACGGCAGTTTTGTACTCTATTGGGGCAGTCCTATGAGAACCCACTGAGTGTAGCAGTTGCTGCAGGAGTTGAGGGGTTGCCCACCTTGTTAAAGCTGGCAAATGTAATGGCAGCAAAGAAGCAAGAGTGGCAGGAAATGAAACAGTTGCCGGTGCCTGTAGAATTGGGTAAGGAATTTCAGTTTCACTCGATTTTTGTTTGCCCTGTGAGTAGGGACCAAGGAAGTGAAGAGAATCCTCCAATGCTGTTGCCATGCTTACATGTCCTTTGCAAGCAATCAATTATGAAGTTATCAAAAAACAGCACCCGAACATTCAAGTGTCCATATTGTCCAGCCGAAGCGACAGTTACACACTGCAGACAACTGTATTTCTGA 1515 0.4416 MGFGKEKDVGGEERRKFEKMGLEQIGVEEVLRMVKVMAMLLCSQVARLVPFFVSSPSHRTRFRFLPHTLSQALQVSVSGWQGVGSKDYSSGYSGGWWPCWGEELTTSGCYLGVCDLSIKMELSSIKDAFDRVAKKQKLSSSKSQEVVDQVGREIEQALAAIQSSRDLSSPADQKSVLTELKFKINAIGPFQQLEGSNKEVNGSIIKYQRPLEKLLNPDISKAYRNVDFDTRIINQIIANHFYRQGLFDLGDSLVNEAGEPDATALRSQFLEMHQIIGAMREKNLQPALTWVSANREKLDHIGSNLELKIHRLQFVEVLQNGTRADALKYARTYLAPFASLNKDEFPKLMGCLLYAGRLESSPYSELMSPIHWEMTTEELARQFCTLLGQSYENPLSVAVAAGVEGLPTLLKLANVMAAKKQEWQEMKQLPVPVELGKEFQFHSIFVCPVSRDQGSEENPPMLLPCLHVLCKQSIMKLSKNSTRTFKCPYCPAEATVTHCRQLYF 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01905 504 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 268 325 IPR006595 -
Vian6g01905 504 Pfam RING-type zinc-finger 447 488 IPR027370 -
Vian6g01905 504 SMART toby_final6 321 415 IPR013144 -
Vian6g01905 504 PANTHER MACROPHAGE ERYTHROBLAST ATTACHER-RELATED 117 503 IPR045098 GO:0004842|GO:0043161
Vian6g01905 504 ProSiteProfiles Gid-type RING finger profile. 447 490 IPR044063 GO:0061630
Vian6g01905 504 SUPERFAMILY RING/U-box 441 501 - -
Vian6g01905 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 437 503 IPR013083 -
Vian6g01905 504 ProSiteProfiles LIS1 homology (LisH) motif profile. 229 261 IPR006594 GO:0005515
Vian6g01905 504 SMART ctlh 268 325 IPR006595 -
Vian6g01905 504 Pfam CTLH/CRA C-terminal to LisH motif domain 268 409 IPR024964 -
Vian6g01905 504 FunFam Regulator of gluconeogenesis Rmd5 439 503 - -
Vian6g01905 504 CDD dRING_Rmd5p-like 445 493 IPR037683 -
Vian6g01905 504 SMART ring_2 447 490 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01905 Vian-Chr6 36284802 36293020 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01905 K23333 - gmx:100799584 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01905 6 36284802 36293020 Vian6g01905 6 36284802 36293020 ECH