Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian6g01890 | ATGATGTCCCCATGGCATGTGATCGTAGCGATTGTTCTCTTGCTGTGTGCAACAAACCTGAGCCTGGCTCAGAACACTCCTCAAGACTATCTTGAGGTGCACAACCAGGCTCGAGCGGAGGTTGGCGTTGGTCCACTGTCGTGGAACCACACCCTTGCAGCCTATGCTCAGAGGTATGCGAATGAGAGGATCCCTGACTGCAACCTTGAGCACTCTATGGGACCCTACGGCGAGAATCTGGCAGAAGGGTACGGCGAAATGAAGGGTTCAGATGCTGTGAAATTCTGGCTCACTGAGAAGCCTGATTATGACTACGGTTCCAATCGTTGTGTTCACGATGAGTGTGGGCATTATACTCAGATTGTGTGGCGCAATTCTATTCATCTCGGGTGTGCAAGAGCTAAGTGTAACAATGGGTTTGCAATTATTGGTAATATTGCCAACGCTCAAGATTCACCAGCGGACTATCTGAATGGACACAACGCTGCACGATCCGAGGTTGGTGTGGAAAATATAATTTGGAATGACACAGTTGCTGCTTTTGCACAGAATTATGCTAATCAGCGTACAGATTGCCAACTGATTCATTCAGGTGGTGGTGGCATCTACGGGGAGAATATTGCAATGAGCACCGGTGACATGAGTGGTGCAGAGGCAACGAAATTGTGGGTGGATGAGAAACTCTTCTATGACTACGCTTTTAACTCTTGTATTGGTGGAGATTGTCTGCACTACACTCAAATTGTTTGGAGAAATTCAGTGTATGTTGGATGTGCCAAAGTAAGATGTGACAATGGAGGCACCTTCGTCACCTGCAACTATTCTCCTCCTGGCAACTATATTGGCGAAAGACCATACTGA | 861 | 0.4739 | MMSPWHVIVAIVLLLCATNLSLAQNTPQDYLEVHNQARAEVGVGPLSWNHTLAAYAQRYANERIPDCNLEHSMGPYGENLAEGYGEMKGSDAVKFWLTEKPDYDYGSNRCVHDECGHYTQIVWRNSIHLGCARAKCNNGFAIIGNIANAQDSPADYLNGHNAARSEVGVENIIWNDTVAAFAQNYANQRTDCQLIHSGGGGIYGENIAMSTGDMSGAEATKLWVDEKLFYDYAFNSCIGGDCLHYTQIVWRNSVYVGCAKVRCDNGGTFVTCNYSPPGNYIGERPY | 286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian6g01890 | 286 | SMART | SCP_3 | 151 | 282 | IPR014044 | - | |
| Vian6g01890 | 286 | SMART | SCP_3 | 25 | 148 | IPR014044 | - | |
| Vian6g01890 | 286 | Gene3D | CAP | 20 | 150 | IPR035940 | - | |
| Vian6g01890 | 286 | CDD | CAP_PR-1 | 27 | 148 | - | - | |
| Vian6g01890 | 286 | ProSitePatterns | CRISP family signature 2. | 269 | 280 | IPR018244 | GO:0005576 | |
| Vian6g01890 | 286 | PRINTS | Allergen V5/Tpx-1 family signature | 115 | 131 | IPR001283 | - | |
| Vian6g01890 | 286 | PRINTS | Allergen V5/Tpx-1 family signature | 92 | 105 | IPR001283 | - | |
| Vian6g01890 | 286 | PRINTS | Allergen V5/Tpx-1 family signature | 46 | 64 | IPR001283 | - | |
| Vian6g01890 | 286 | PRINTS | Allergen V5/Tpx-1 family signature | 269 | 282 | IPR001283 | - | |
| Vian6g01890 | 286 | CDD | CAP_PR-1 | 153 | 286 | - | - | |
| Vian6g01890 | 286 | PANTHER | CYSTEINE-RICH SECRETORY PROTEIN-RELATED | 154 | 283 | IPR001283 | - | |
| Vian6g01890 | 286 | FunFam | Putative pathogenesis-related protein 1 | 150 | 286 | - | - | |
| Vian6g01890 | 286 | Gene3D | CAP | 151 | 286 | IPR035940 | - | |
| Vian6g01890 | 286 | SUPERFAMILY | PR-1-like | 153 | 286 | IPR035940 | - | |
| Vian6g01890 | 286 | ProSitePatterns | CRISP family signature 1. | 116 | 126 | IPR018244 | GO:0005576 | |
| Vian6g01890 | 286 | FunFam | CAP, cysteine-rich secretory protein, antigen 5 | 24 | 147 | - | - | |
| Vian6g01890 | 286 | Pfam | Cysteine-rich secretory protein family | 31 | 140 | IPR014044 | - | |
| Vian6g01890 | 286 | Pfam | Cysteine-rich secretory protein family | 157 | 274 | IPR014044 | - | |
| Vian6g01890 | 286 | SUPERFAMILY | PR-1-like | 15 | 142 | IPR035940 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian6g01890 | Vian-Chr6 | 36183790 | 36188802 | Dispersed/Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian6g01890 | K13449 | - | taes:123117199 | 283.493 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vian6g01890 | 6 | 36183790 | 36188802 | Vian6g01890 | 6 | 36183790 | 36188802 | ECH |