Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01782 ATGATTCTTCGCAGAATCGCAATCACGTGCAGATCATACTACACGAGCAGGACAAATAAACCTAGCCTGTACTCAAAAATCAGTCCCCTCGGAAATCCCAACACCAGTGTGGTTCCGGTGCTCGACGATTGGGTGTACAAGGGGAACAAGGTCCGAGTCGCAGAACTTCAACGCGTCATTCGCGACCTTCGCAAACGCAGTAGGTTCTCCCAAGCCCTCCAGGTATCTGAGTGGATGTACATGAAGGGTGTGTGCGTATTCTCTCCAACGGAACATGCGGTGCATTTGGATTTGATTGGCAATGTTCAAGGATACTCTGCTGCAGAAAGCTATTTTGATGCCTTGAGGAATGAAGACAAAACTCATCAGACCTACGGTGCTCTCTTGAATTGCTACGCTCGGCAGCGGGAAACTGACAAGGCACTCTCTCATTTTCAGAAAATGAAGGAGTTGGGGTTTGCTTCGTCTCCACTAAATTACAATGTCATTATGTGCCTGTATGCAAAGATTGGACAGCATGAGAAGGTTGCTGATGTGCTAAGTGAGATGAAAAAGAACCAAGTCATGCCTGACAACTTCAGCTACAGGATCTGTATAAATTCTTATGGTGTGAGGTCTGATTTTTGTGGAGTGGAAAGAGTGTTGAAAGAGATGGAGACTCAACCACACATTGTGATGGACTGGAACACTTACTCTATCGTGGCCAATTTTTATATAAAAGCTGGGTTTAGACGCGAGGCAGTTTCTGCCCTAAAGAAATCCGAGGAGAGGCTAGGTAACAAAGATGGCGAGGGTTACAATCACCTCATCTCTATGTATGCCCGACTTGAACTGAAAAAAGAGGTTATGAGAATATGGGATTTGGAGAAAAGTTCTTGTAAGAGGTGCATAAACAGAGATTTCACAACCATGTTAGAATCTCTGGTAAAGCTTGGGGAGCTTGATGAAGCTGAGAAAATACTTACGGAATGGGAATCCTCCGGAAATTGTTATGATTTTGGAATCCCTAGTATTGTAATCACTGGGTATGCACAAAAAGGTTTGCATGAGAAAGCCGAGGCCATCCTCCTAGAGTTACAAAATAAGGAAAAGCTCACAAGCCCAAACTGTTGGTCGATGGTGGCAGGTGGATATCTTCACAAAGGTGACACGGAGAAGGCATTGGGGTGCTTTAAAACTGCCCTCTCTATGTACGTGGAAAATAAAGGATGGAAGCCGAATGCAAAGGTGGTTGCAGAACTGTTGCGTTGGATTGCTGATAACGGCAGTATTGAAGATGCAGAAGATTTCATCAGATTGTTAAGAAAGGCCGTCCCAGTGAATAGACAAGTATATCATACCCTAATCAAGACTTATGTGCGAGGTGGTAAAGAAGTGGATGAGCTTCTAGAGCACATGGAGAAAGATGGCATTGTTGAAAACGAAGAAACTAAGAAAATAATTAACATCAGGAGTGCATGA 1461 0.4401 MILRRIAITCRSYYTSRTNKPSLYSKISPLGNPNTSVVPVLDDWVYKGNKVRVAELQRVIRDLRKRSRFSQALQVSEWMYMKGVCVFSPTEHAVHLDLIGNVQGYSAAESYFDALRNEDKTHQTYGALLNCYARQRETDKALSHFQKMKELGFASSPLNYNVIMCLYAKIGQHEKVADVLSEMKKNQVMPDNFSYRICINSYGVRSDFCGVERVLKEMETQPHIVMDWNTYSIVANFYIKAGFRREAVSALKKSEERLGNKDGEGYNHLISMYARLELKKEVMRIWDLEKSSCKRCINRDFTTMLESLVKLGELDEAEKILTEWESSGNCYDFGIPSIVITGYAQKGLHEKAEAILLELQNKEKLTSPNCWSMVAGGYLHKGDTEKALGCFKTALSMYVENKGWKPNAKVVAELLRWIADNGSIEDAEDFIRLLRKAVPVNRQVYHTLIKTYVRGGKEVDELLEHMEKDGIVENEETKKIINIRSA 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01782 486 Pfam PPR repeat 338 361 IPR002885 -
Vian6g01782 486 Pfam PPR repeat 124 153 IPR002885 -
Vian6g01782 486 Pfam PPR repeat 301 328 IPR002885 -
Vian6g01782 486 Pfam PPR repeat 371 392 IPR002885 -
Vian6g01782 486 FunFam Pentatricopeptide repeat-containing protein mitochondrial 53 264 - -
Vian6g01782 486 SUPERFAMILY TPR-like 107 400 IPR011990 GO:0005515
Vian6g01782 486 Gene3D Tetratricopeptide repeat domain 397 482 IPR011990 GO:0005515
Vian6g01782 486 Gene3D Tetratricopeptide repeat domain 207 290 IPR011990 GO:0005515
Vian6g01782 486 Gene3D Tetratricopeptide repeat domain 291 396 IPR011990 GO:0005515
Vian6g01782 486 Gene3D Tetratricopeptide repeat domain 29 206 IPR011990 GO:0005515
Vian6g01782 486 NCBIfam pentatricopeptide repeat 301 330 IPR002885 -
Vian6g01782 486 NCBIfam pentatricopeptide repeat 160 191 IPR002885 -
Vian6g01782 486 NCBIfam pentatricopeptide repeat 124 153 IPR002885 -
Vian6g01782 486 SUPERFAMILY TPR-like 229 430 IPR011990 GO:0005515
Vian6g01782 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Vian6g01782 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Vian6g01782 486 PANTHER OS12G0527900 PROTEIN 19 472 - -
Vian6g01782 486 Pfam PPR repeat family 160 202 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01782 Vian-Chr6 35327899 35329701 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01782 22 449 EF-hand Containing Proteins AT1G02150 31.702 2.57e-72 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01782 - - gmx:100805658 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01782 6 35327899 35329701 Vian6g01782 6 35327899 35329701 ECH