Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01775 ATGGATGCTCACATTACTGATTTGGAGTGGGAAACTTCCAGTGACAGCAGCAACAGCAGTGAGGATCAAGAGGATATTGATTTTCAATATGGTGGACAAGCCCGGAGCATATTATCGAGTTTAGAGGAAAGCATCGGAAAGATTGATGACTTTCTCTCATTTGAGAGGACATTTGTCCATGGGGATGTGGTCTGTTCCTCCTCCGACCCATCAGGACAGATGGGGAGGGTCACAAGTGTTGATGTGTCAGTGGACTTGGAAAGTGTTCAAGGAAAGAAATTAAAAAATGTGAACTCCAAGAAACTTATGAAGATTCGCTCCATTTCAGAAGGTGATTATGTAATTAAGGGGCCATGGATTGGTCAGGTTCAAAGGGTAGTAGACAGAGTGGTTATATTGTTTGATGATGGAACTAAATGTGAGGTCATTACCTTGGAAAAAGATCAGATTTTACCATTGACTCATAATCTTCTTGAAGATTCACAGTATCCGTACTATCCAGGGCAGAGAGTCAAGGTTAAGAAGACCTCCACAGCTTCTAAACCAGCAAGGTGGCTGTGTGGCACCTGGAAAGACAATCATGGTGAAGGAACTGTTTGTGCTGTGGAAGCAGGTTTGGTGTACGTTAATTGGTTTGCCTCTGTTCTTTTCGGTTCCAATTTGAATGTAAATGTTCCTCTATGCTGGCAAGACTCAAAAAACATGACCTTGTTGTCCTGTTTTTCACATACAAACTGGCAACTTGGTGATTGGTGCATGCTTCCACCTGTGGACCAAAAGGAACAGATGATTCAAGATGCATCTCCATGTGATCCTCAAAACGAGCATAGTAAGGCTAGAGGATGTAAGACGAGTAACATTGGGGAATTATTTATAATTGAGAAGATAAAGACCGAAGTTGATGTCATTTGGCAAAATGGTGAACATACTATGGGATTAGATCCGCTTAACTTAATCCCAGTGAATGTCATAAACAGTCATGAATTTTGGCCCCAGCAGTTTGTGCTGGAAAAAGGTGTTTCTGATGATCCTCTTAAACCTAGCAATCAAAGATGGGGTGTTGTTCTTTCCATGGATGCAAAAGAGCATACTGTAAAGGTACAATGGAGAACTTCTCCCACATCCGGGACTGATAATTTGACTGGAGATGCAATGATGGAAACTGTGAGTGCCTATGAACTACTCGAGCATCCAGATTATTCTTGTTGTTTTGGCGATATTGTGTTCAAGGCGGCTCAAAAGCAGCTTGGTGACCAAGCTGACAAAGATAATGTGAAGTCGGCAACTGATGTAATTGTAGAGGCTCCTCTGATAAACCGGGACCAAATCAGTTATCAGAATAAATCTGTAGATAGCAGTTACCTCTCCTGCATTGGCAATGTTACTGGTTTCATAGATGGTGATGTGGAGGTCAAATGGGCTACTGGTTTAACAACAAAGGTTGCACCTTATGAAATTTTCCGAATTGATAAGCATGAAGATTTAACTGCAACCCCTGTTCCTTATGAAGCAAATGTTGAGGAGTTCTCCCAAGAGATGATTGATCATAGAAGTCTTTCATCAGAACAGAAGGGAAAGACATTGTTAGATTGTAATGGCGATAGAGAAAATTGTGAAAAGCATTCAGGAGAGAGCAGTTCCTCATCCCTTCCTCAAGCTGCCTTTGAACTGTTCTCCACCATTAAGGCTAGCATACTCAAAACACTTTCTGTAGCATCGCTTTCTGGAAAATTCTCCCCAATCCCTAGGTTTGAAGAGGGAAATGAATCAAACTGTCTTGATAAGAAAGATTTGGACACTTGTGACCCTGACACTGACTCACATTTGGTGAGCAAGCTGCAGTCTTCGGAAGGCATAACTCCATACTGTGAAGTTATTGGGACTCATGAGAGGAATGACTTTCCAGTTTCTTTAGACAACAAAAGCTCAGATCAGTTGAAGCAGTTTGATGTAATTGATAATTGCTCAGACCACCACTTTTTTGATCAGGGGAAAGGGTTTTCGTTTTCTCAGGTAAAAAAAGATTGGGTGAAGAAGGTACAACAAGATTGGATCATCCTGGAAAAAAATCTCCCTGAAACTATTTATGTCCGTGTCTTTGAAGAAAGAATGGATCTCATGCGAGCAGCCATTGTGGGTGTGTCTGGAACACCTTATCATGATGGATTGTTTTTCTTTGATATACATTTCCCTTCAGAGTTTCCCAGCCAACCCCCGATGGTACATTACATTTCTGGTGGACTACGATTGAATCCTAATTTGTATGAGTCTGGTAAAGTCTGTTTGAGTCTCCTAAATACGTGGACCGGTACAGCTGCCGAAGTTTGGAACCCTGGAACTTCAACCATTCTTCAAGTCCTTCTTTCCCTGCAGGCCCTTGTCCTTAATGAGAAGCCTTATTTCAATGAGGCTGGATATGATCAACAAATTGGTAGAGCTGAAGGGGAGAGAAACTCTGTTAGTTACAATGAGAATGCTTTCCTTGTCACCTGCAAATCCATTTTGTATCTATTAAGAAAGCCTCCCAAGCATTTTGAGGCTTTGGTGGAGGAGCACTTTAGACAACGTTCCAGACATATACTTCTGGCTTGTAAGGCATATCTTGAAGGAGCTCCTATTGGATGTGCTTTTGGTGGTGAAAATACTGAGAATGAAAACCAAAAGGGAACTTCTACTGGATTTAAGATCATGCTTGCTAAGCTTTTCCCGAAGCTTGTGGAGGCATTTTCTGACAAGGGAATTGATTGCAGCCAGTTTGCTGAGATGCAAAAGTAA 2775 0.4162 MDAHITDLEWETSSDSSNSSEDQEDIDFQYGGQARSILSSLEESIGKIDDFLSFERTFVHGDVVCSSSDPSGQMGRVTSVDVSVDLESVQGKKLKNVNSKKLMKIRSISEGDYVIKGPWIGQVQRVVDRVVILFDDGTKCEVITLEKDQILPLTHNLLEDSQYPYYPGQRVKVKKTSTASKPARWLCGTWKDNHGEGTVCAVEAGLVYVNWFASVLFGSNLNVNVPLCWQDSKNMTLLSCFSHTNWQLGDWCMLPPVDQKEQMIQDASPCDPQNEHSKARGCKTSNIGELFIIEKIKTEVDVIWQNGEHTMGLDPLNLIPVNVINSHEFWPQQFVLEKGVSDDPLKPSNQRWGVVLSMDAKEHTVKVQWRTSPTSGTDNLTGDAMMETVSAYELLEHPDYSCCFGDIVFKAAQKQLGDQADKDNVKSATDVIVEAPLINRDQISYQNKSVDSSYLSCIGNVTGFIDGDVEVKWATGLTTKVAPYEIFRIDKHEDLTATPVPYEANVEEFSQEMIDHRSLSSEQKGKTLLDCNGDRENCEKHSGESSSSSLPQAAFELFSTIKASILKTLSVASLSGKFSPIPRFEEGNESNCLDKKDLDTCDPDTDSHLVSKLQSSEGITPYCEVIGTHERNDFPVSLDNKSSDQLKQFDVIDNCSDHHFFDQGKGFSFSQVKKDWVKKVQQDWIILEKNLPETIYVRVFEERMDLMRAAIVGVSGTPYHDGLFFFDIHFPSEFPSQPPMVHYISGGLRLNPNLYESGKVCLSLLNTWTGTAAEVWNPGTSTILQVLLSLQALVLNEKPYFNEAGYDQQIGRAEGERNSVSYNENAFLVTCKSILYLLRKPPKHFEALVEEHFRQRSRHILLACKAYLEGAPIGCAFGGENTENENQKGTSTGFKIMLAKLFPKLVEAFSDKGIDCSQFAEMQK 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01775 924 Gene3D Ubiquitin Conjugating Enzyme 638 916 IPR016135 -
Vian6g01775 924 SUPERFAMILY UBC-like 669 844 IPR016135 -
Vian6g01775 924 CDD UBCc 677 830 IPR000608 -
Vian6g01775 924 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 9 916 - -
Vian6g01775 924 Pfam Ubiquitin-conjugating enzyme 682 826 IPR000608 -
Vian6g01775 924 MobiDBLite consensus disorder prediction 10 24 - -
Vian6g01775 924 FunFam Probable ubiquitin-conjugating enzyme E2 23 637 913 - -
Vian6g01775 924 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 675 835 IPR000608 -
Vian6g01775 924 SMART ubc_7 678 835 - -
Vian6g01775 924 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01775 Vian-Chr6 35258467 35262966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01775 22 918 Miscellaneous Gene Families AT2G33770 47.855 0.0 844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01775 K10581 - gmx:100805463 1549.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01775 6 35258467 35262966 Vian6g01775 6 35258467 35262966 ECH