Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01639 ATGGAGGGCAAAATCTTGGATCATCAGAATCAGGTGAAAGCGCAAGCTGTGGAAAATTTATCACAAAGGCTTTCTAGTTTCTCCGTTAGGGACCAGATATCCAATTCCGATTCTCCTCAGGATGATGAGGTCGGTGGTAGGAGGAGGAGTTGCGATACTAAAGAGTATTCTGATTCTTTTTCCTCTGATAGTACTGCACGGTACTCTATAAATTCTTCTGGATTGTATCCTGAATTCCCCGAAAAACAATTGGAAAACCATAACGAAGATATGGAGTCTTCAGCTAATCTTCAGAAGCAGGGAAGGTACTTCTATTACGATACTCCACTGCAGGAAGATACTGGAGTGTGGATACCAGTTTCAGTTCCACCTATGTTAGAAGATGATCATAAAGAGTGGGCCAAAGGTTTTCACTCAAACGGTGGCTATTTTCCTGATGAGGACTTGGGGTGGAATCAATATGTAGGAGATGAAAGGGAATTGACTATGTGGGATGTGCTAGCAGAAATGTTACTTGTGGCTCGGGGAAAAGTGACTTCTTTGTCATCAGGAGATATTAATATGTGTAATTTTTCATGGATATCCAGCCGTGTACTACTTGAACAAGCTTGGAGAGAGATGGCACAAACTCTCACAGAGGCCAATTTTGGTAATGTGAAGGAACTATTAGAAGCCGAGCCCCCAAAGTGGTTAGCTGATAGTGCTGCTTCTTCTTGTATGCTTTGTGGGGTGAGGTTTCATCCCATCATGTGCTCTCGACATCACTGCCGGTTTTGTGGAGGAATATTTTGTGGTGAGTGCTCTAAAGGAAGGAGCTTGTTGCCATCAAAATTCCGAGTTTCTGACCCCCAAAGAGTATGTGATGTATGCTGTGTCCGACTCGAGTCTGTACAGCCTTATTTAATGGATCATGTAAGCAATGCTGCTCAGTTGCCAACCCATGACCTGACAGATCTGAGCACTTTGAGATCTTGGGTTAATTTTCCTTGGTGGCAGTCCATGGAATGTGAAATTTACAAGGCAACTAACACTATCAAGGCATATAATCAGATTGGTTTTCTGAAGCCCGAGAAGTCAATTCCAGATGTCATTCTAAGAAAAGCAAAAGGCCTTGCAATTATCACTGTGGTTAGAGTGGGAGTGGTGGTTACGTATAACATTGGAACAGGACTTGTGATTGCACGAAGGGAAGATGGTTCATGGTCTGCTCCATCTGCTGTGTCCACCTTTGGTGTAGGGTGGGGAGCTCAGGCCGGAGGAGAATTGACAGACTTCATTATTGTCTTGAGAACAGATGATGCTGTCAAGACATTTAGTGGCAATATGCATGTTTCACTTGGAGCTGGTTTGAGTGCTGCAGTAGGCATTGTTGGTAGATCAGTTGAAGCTGATGTTCGAGCTGGTGATGGTGGTTATGCTGCTTGCTATACCTACAGCTGCAGTAAAGGTTTTTGTCACCACATGATGGCTAAAGTTGACTTCAGTATGAAACCCTTGGAAGGCTCATTGGGACCCGATTGTGCATTTGTTGGATGTTCACTAGAAGGGAGTATGGTGACTACTCGCACGCAAGAAAATTCCCGTTTCTATGGCAGCCAGTCTATAGCTGCAACAGACATACTTGGCTCGTTGCCTAGGCCACCTGCTGCTGCCATTCTCTACCGTGCACTTGCTGATCTCTATTCCAGGGTTGATGGATGA 1701 0.4444 MEGKILDHQNQVKAQAVENLSQRLSSFSVRDQISNSDSPQDDEVGGRRRSCDTKEYSDSFSSDSTARYSINSSGLYPEFPEKQLENHNEDMESSANLQKQGRYFYYDTPLQEDTGVWIPVSVPPMLEDDHKEWAKGFHSNGGYFPDEDLGWNQYVGDERELTMWDVLAEMLLVARGKVTSLSSGDINMCNFSWISSRVLLEQAWREMAQTLTEANFGNVKELLEAEPPKWLADSAASSCMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPSKFRVSDPQRVCDVCCVRLESVQPYLMDHVSNAAQLPTHDLTDLSTLRSWVNFPWWQSMECEIYKATNTIKAYNQIGFLKPEKSIPDVILRKAKGLAIITVVRVGVVVTYNIGTGLVIARREDGSWSAPSAVSTFGVGWGAQAGGELTDFIIVLRTDDAVKTFSGNMHVSLGAGLSAAVGIVGRSVEADVRAGDGGYAACYTYSCSKGFCHHMMAKVDFSMKPLEGSLGPDCAFVGCSLEGSMVTTRTQENSRFYGSQSIAATDILGSLPRPPAAAILYRALADLYSRVDG 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01639 566 MobiDBLite consensus disorder prediction 41 56 - -
Vian6g01639 566 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 233 295 IPR017455 -
Vian6g01639 566 SMART fyve_4 225 296 IPR000306 GO:0046872
Vian6g01639 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 305 IPR013083 -
Vian6g01639 566 CDD SYLF_FYVE 337 560 - -
Vian6g01639 566 MobiDBLite consensus disorder prediction 27 67 - -
Vian6g01639 566 FunFam Zinc finger family protein 219 301 - -
Vian6g01639 566 Pfam FYVE zinc finger 229 294 IPR000306 GO:0046872
Vian6g01639 566 Pfam Las17-binding protein actin regulator 508 558 IPR007461 -
Vian6g01639 566 Pfam Las17-binding protein actin regulator 411 486 IPR007461 -
Vian6g01639 566 SUPERFAMILY FYVE/PHD zinc finger 228 307 IPR011011 -
Vian6g01639 566 PANTHER SH3YL1 PROTEIN 508 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01639 Vian-Chr6 33941823 33945183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01639 230 313 EF-hand Containing Proteins AT3G14270 34.831 1.67e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01639 K20523 - gmx:100813648 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01639 6 33941823 33945183 Vian6g01639 6 33941823 33945183 ECH