Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01409 ATGGTTGAACAGGTATTGAAAATGGGAAGCATGTCAAATGTGATCGTCTTCTGTTTCTGTCTGTGGGCCCTCTTGTTTTCTCTGGCGTCGTCTGCACCCAACGATGGCTTGCGCCGGATTGGACTGAGAAAGATCAAATTGGACGGCGATGACTTTATGCGGTTTAAGGAATTGAGAAAGAACGTTCTTCCGAACATTCTTCTTGGTGCTGACGGCGCCGATATTGTTGCGTTGAAGAACTACTTGGATGCTCAGTACTATGGTGAAATAGCCATTGGTACCCCTCCTCAGACGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCGTCTTCTAAATGTTACCTCTCGCTTGCATGTTACACGCATGCTAAGTACAAGTCCAGCCAATCCAGTACCTACAAGGAAAATGGGACTTCTGCTGCAATTCAATACGGTAGTGGAAGTATTTCTGGTTTCTTTAGCAATGACAATGTCAGAGTTGGAGACGTAGTTGTAAATAACCAGGCATTTATTGAAGCAACTAGAGAACCTGGAGTTACATTTGTGGCAGCTAAGTTTGATGGTATACTAGGACTTGGATTTCAAGAGATCTCAGTGGGAAATGCTGTTCCAGTGTGTTTGACATGGGAGAGGTGCTCATTGCCGGTAAACCCACTGACTATAATTACTGAGATAAATCAAGCAATCGGAGCATCTGGAGTTGTAAGCAAAGAGTGCAAGTCTGTTGTCGAACAGTATGGACAAACAATCTTGGAATTGCTCTTGGCTGAAGAAAAGCCTAAAAAGATCTGCTCACAGATTGGATTGTGTTCCTTTGATGGGACTCGTTCTGTTAGCATGGGCATTGAGAGTGTTTTGGATAAGGACAAAAGAGAATCATCTGGTGGCATTCGGGGTGCTGCTTGTTCAACATGTGAGATGGCTGTTATTTGGATTCAAAACCAGCTGAGGCAGAACCAGACAGAAGATCAGATAATAGATTATGTCAATGGGCTTTGTGATAAGTTGCCCAGCCCAATGGGACAATCATCTGTTGATTGTGGACAAATCTCTTCAATGCCTATTGTTTCCTTTACTATTGGTGGAAAAGTTTTTGACCTTTCCCCAAATGAGTATATACTGAAGGTGGGAGAAGGTCCTCAAGCCCAATGCATCAGTGGCTTCATTGCTATGGATGTGCCTCCTCCTCGTGGCCCTCTATGGATCCTTGGAGATATCTTCATGGGGCCCTATCACACCATCTTTGATTATGGTCAGCAGAGAGTCGGGTTTGCTGAAGCAGCATAG 1299 0.4434 MVEQVLKMGSMSNVIVFCFCLWALLFSLASSAPNDGLRRIGLRKIKLDGDDFMRFKELRKNVLPNILLGADGADIVALKNYLDAQYYGEIAIGTPPQTFTVIFDTGSSNLWVPSSKCYLSLACYTHAKYKSSQSSTYKENGTSAAIQYGSGSISGFFSNDNVRVGDVVVNNQAFIEATREPGVTFVAAKFDGILGLGFQEISVGNAVPVCLTWERCSLPVNPLTIITEINQAIGASGVVSKECKSVVEQYGQTILELLLAEEKPKKICSQIGLCSFDGTRSVSMGIESVLDKDKRESSGGIRGAACSTCEMAVIWIQNQLRQNQTEDQIIDYVNGLCDKLPSPMGQSSVDCGQISSMPIVSFTIGGKVFDLSPNEYILKVGEGPQAQCISGFIAMDVPPPRGPLWILGDIFMGPYHTIFDYGQQRVGFAEAA 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01409 432 Gene3D Acid Proteases 39 217 IPR021109 -
Vian6g01409 432 ProSiteProfiles Saposin B type domain profile. 302 343 IPR008139 -
Vian6g01409 432 Gene3D - 233 341 - -
Vian6g01409 432 FunFam Cathepsin D 86 213 - -
Vian6g01409 432 Pfam Eukaryotic aspartyl protease 85 209 IPR033121 -
Vian6g01409 432 ProSiteProfiles Saposin B type domain profile. 238 278 IPR008139 -
Vian6g01409 432 FunFam Aspartic proteinase A1 238 341 - -
Vian6g01409 432 Pfam Eukaryotic aspartyl protease 218 431 IPR033121 -
Vian6g01409 432 ProSiteProfiles Peptidase family A1 domain profile. 86 429 IPR033121 -
Vian6g01409 432 FunFam Vacuolar aspartic proteinase 314 431 - -
Vian6g01409 432 Pfam Saposin-like type B, region 2 241 274 IPR008138 -
Vian6g01409 432 Pfam Saposin-like type B, region 1 305 341 IPR007856 GO:0006629
Vian6g01409 432 SUPERFAMILY Acid proteases 76 431 IPR021109 -
Vian6g01409 432 PRINTS Pepsin (A1) aspartic protease family signature 405 420 IPR001461 GO:0004190|GO:0006508
Vian6g01409 432 PRINTS Pepsin (A1) aspartic protease family signature 92 112 IPR001461 GO:0004190|GO:0006508
Vian6g01409 432 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 101 112 IPR001969 GO:0004190|GO:0006508
Vian6g01409 432 SUPERFAMILY Saposin 239 341 IPR011001 -
Vian6g01409 432 Gene3D Acid Proteases 346 432 IPR021109 -
Vian6g01409 432 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 74 209 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01409 Vian-Chr6 31632251 31636241 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01409 K08245 - gmx:547943 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01409 6 31632251 31636241 Vian6g01409 6 31632251 31636241 ECH