Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01373 ATGAAGACCGGGTCGGGTCCCAAAGAGTATCAGGAATGGTTCAATTTGGCTGATTCAGACGGAGATGGACGAATCTCTGGAAACGAGGCCACTAAGTTCTTCGCTCTCTCCAACTTGTCACGCTCGCAACTCAAACAGCTCTGGGCTCTCGCTGATGTCAAACGACAGGGGTTTTTGGGTTTTCCGGAGTTCGTTACTGCAATGCAGTTGGTTTCGCTGGCGCAAGCAGGGCAAGAACTTAACTCAGATATTCTCAAAACTCAAGTTGATAAGGAAAATATTAAACCTCCTACATTGGAAGGACTCGATGCTTTAGTAGCATTATATTTGATTGGATTGTTTAACCTGTATTATGTAGGGATTGCTCAGCCACAAGGGTTTCCAACTAATCGGTGGTTTGGTTCAAAATCTTCAAAGAAATTACCTCTCAATTCAGTTACATCAATCATTGATGGCTTGAAGAGATTATATATCGAGAGGTTAAAGCCCTTGGAAGTTACCTACCGATATAATGATTTTGTGTCTCCATTGTTGACCAACACTGATTTTGATGCTAAACCCATGGTCATGCTCCTGGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAGATGTGACTATCCAGGAGCACATGTTGGACCAGAGCCTACCACTGATAGATTTGTTGTTGTCATGTCTGGACCTGATGAGAGGAGTATTCCTGGGAATACCATAGCTGTTGATGCTGACATGCCTTTCAGCGGCTTGACAACATTTGGAGGTTCTTTTTTATCAAAGTTCCAATGTTCTCAAATGCCACATCCTCTGTTAGATGAAATAACACTTGTGGACACTCCTGGAGTGTTGTCTGGAGAGAAACAGAGGACTCAACGAAGCTATGATTTCACTGGTGTCGTGTCTTGGTTTGCTGCAAAATGTGATCTCATTCTTCTTCTGTTTGATCCTCATAAACTAGACATCAGCGATGAGTTCAAACGCGTAATCACATCTTTACGTGGTCATGATGACAAGATACGAGTGGTTTTGAATAAGGCAGATCAAGTTGATACTCAACAACTTATGAGAGTGTATGGAGCATTGATGTGGTCATTGGGGAAAGTTCTAAATACTCCCGAAGTTTCACGTGTATACATTGGCTCATTTAACGATAAGCCTATGGATGAAGACTCCGTAAGTCCATTAGTGCAGGATCTGTTTGAGAAGGAACAAAATGATCTGCTTGCAGATTTGATAGATATTCCAAAGAAGGCATGCGATCGCCGGATCAACGAATTTGTGAAACGTGCTAGATCTGCTAAAATTCATGCGCATATAATTAGCCACCTTAAGAAGGAGATGCCTGCAATAATGGGCAAAGCCAAGGCTCAACAGAGACTTACTGACAATCTCGAGGAAGAATTTGCAAAGGTCCAAAGAGAGTTTCATCTACCTGCTGGTGATTTTCCCAGTGTTGAAAACTTCAGAGAAGTTTTGAGTGGTTATAGCATCGACAAATTTGAGAAACTAAAGCCCAAAATGATTCAAGCCGTGGATGACATGCTTGGATATGAAATACCAGAGCTTTTAAAGAAATTCAGAAATCCTTATGATTAA 1605 0.4112 MKTGSGPKEYQEWFNLADSDGDGRISGNEATKFFALSNLSRSQLKQLWALADVKRQGFLGFPEFVTAMQLVSLAQAGQELNSDILKTQVDKENIKPPTLEGLDALVALYLIGLFNLYYVGIAQPQGFPTNRWFGSKSSKKLPLNSVTSIIDGLKRLYIERLKPLEVTYRYNDFVSPLLTNTDFDAKPMVMLLGQYSTGKTTFIKHLLRCDYPGAHVGPEPTTDRFVVVMSGPDERSIPGNTIAVDADMPFSGLTTFGGSFLSKFQCSQMPHPLLDEITLVDTPGVLSGEKQRTQRSYDFTGVVSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVSRVYIGSFNDKPMDEDSVSPLVQDLFEKEQNDLLADLIDIPKKACDRRINEFVKRARSAKIHAHIISHLKKEMPAIMGKAKAQQRLTDNLEEEFAKVQREFHLPAGDFPSVENFREVLSGYSIDKFEKLKPKMIQAVDDMLGYEIPELLKKFRNPYD 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01373 534 CDD EH 10 76 IPR000261 GO:0005515
Vian6g01373 534 SMART efh_1 9 37 IPR002048 GO:0005509
Vian6g01373 534 SMART efh_1 43 71 IPR002048 GO:0005509
Vian6g01373 534 CDD EHD 188 432 - -
Vian6g01373 534 Gene3D - 189 417 IPR027417 -
Vian6g01373 534 SMART eh_3 7 90 IPR000261 GO:0005515
Vian6g01373 534 SUPERFAMILY EF-hand 8 77 IPR011992 -
Vian6g01373 534 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 183 419 IPR030381 GO:0005525
Vian6g01373 534 Gene3D - 153 525 - -
Vian6g01373 534 ProSiteProfiles EF-hand calcium-binding domain profile. 42 74 IPR002048 GO:0005509
Vian6g01373 534 ProSiteProfiles EF-hand calcium-binding domain profile. 5 40 IPR002048 GO:0005509
Vian6g01373 534 PANTHER EH DOMAIN 10 531 - -
Vian6g01373 534 Pfam Cytoskeletal-regulatory complex EF hand 9 71 IPR000261 GO:0005515
Vian6g01373 534 Coils Coil 457 477 - -
Vian6g01373 534 ProSiteProfiles EH domain profile. 6 100 IPR000261 GO:0005515
Vian6g01373 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 456 IPR027417 -
Vian6g01373 534 Gene3D - 4 100 - -
Vian6g01373 534 Pfam N-terminal EH-domain containing protein 152 184 IPR031692 -
Vian6g01373 534 Pfam Dynamin family 189 348 IPR045063 -
Vian6g01373 534 Pfam Domain of unknown function (DUF5600) 424 525 IPR040990 -
Vian6g01373 534 FunFam EH domain-containing protein 1 189 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01373 Vian-Chr6 31265109 31268674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01373 8 534 EF-hand Containing Proteins AT4G05520 78.030 0.0 871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01373 K12483 - gmx:100809091 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01373 6 31265109 31268674 Vian6g01373 6 31265109 31268674 ECH