Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01287 ATGGTTCAGTGCTTTGATGGATTAAAGCAGTTGTATACTGCTGTGATAAGCTTTTGTGCTGCTGATCTGTCCCAGCAGCAGCCCAGAGGTTTAGGAAATCCAGAAGCACTTGCAAGAGAAACAGTGTTTAGTGTAAGTGAGATTGAAGCACTGTATGAACTATTCAAGAAGATCAGCAGTGCAGTAATTGACGATGGACTAATTACTAAGGATGAATTTCAGTTGGCCTTGTTTAAGACAACCAAGAAAGAGAGCTTATTTGCGGATAGGGTGTTTGACTTGTTTGACACAAAGCATCAGGGGATACTTGATTTCAAAGAGTTTGCACTTGCTCTTTCTATTTTTCATCCCAATGCACCAATCAATGATAAGATTGAGTTTTCATTCCAATTGTATGATCTCAAACAACAAGGATTTATAAAGAGACAGGAGTTGAAACAAATGGTGGTGGCCACTCTAGCCGAAGCTGGCATGAGTCTTGCAGATGACGTGATTGAAAGCATTATTGACAAGACATTTGAGGAAGCGGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCATCATCCTTCCCTTCTTAAAAATATGACTCTTCAGTATCTTAAAGATATTACAACTACATTTCCCAGTTTTGTATTTCATTCACAAGTTGACGATGTTTGA 684 0.3889 MVQCFDGLKQLYTAVISFCAADLSQQQPRGLGNPEALARETVFSVSEIEALYELFKKISSAVIDDGLITKDEFQLALFKTTKKESLFADRVFDLFDTKHQGILDFKEFALALSIFHPNAPINDKIEFSFQLYDLKQQGFIKRQELKQMVVATLAEAGMSLADDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLHHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDV 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01287 227 PANTHER CALCINEURIN B 25 226 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vian6g01287 227 Pfam EF-hand domain pair 65 108 IPR002048 GO:0005509
Vian6g01287 227 Pfam EF-hand domain pair 123 191 IPR002048 GO:0005509
Vian6g01287 227 ProSiteProfiles EF-hand calcium-binding domain profile. 164 199 IPR002048 GO:0005509
Vian6g01287 227 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Vian6g01287 227 Gene3D - 33 227 - -
Vian6g01287 227 ProSiteProfiles EF-hand calcium-binding domain profile. 120 155 IPR002048 GO:0005509
Vian6g01287 227 FunFam calcineurin B-like protein 3 33 226 - -
Vian6g01287 227 SMART efh_1 168 196 IPR002048 GO:0005509
Vian6g01287 227 SMART efh_1 87 115 IPR002048 GO:0005509
Vian6g01287 227 SMART efh_1 124 152 IPR002048 GO:0005509
Vian6g01287 227 PRINTS Recoverin family signature 138 156 - -
Vian6g01287 227 PRINTS Recoverin family signature 91 112 - -
Vian6g01287 227 PRINTS Recoverin family signature 184 204 - -
Vian6g01287 227 SUPERFAMILY EF-hand 34 219 IPR011992 -
Vian6g01287 227 CDD EFh 124 193 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01287 Vian-Chr6 30485558 30488681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01287 1 227 EF-hand Containing Proteins AT5G55990 81.938 3.21e-133 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01287 K06268 - gmx:100808191 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01287 6 30485558 30488681 Vian6g01287 6 30485558 30488681 ECH