Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01146 ATGGTGAAGGTGCGAATGAACACCGCCGATGTAGCCGCCGAGGTTAAATGCCTCCGGCGCTTCATTGGAATGCGGTGCTCCAACGTCTACGATCTTTCTCCGAAGACCTACGTGTTTAAGCTGATGAACAGCAGTGGAGTTTCGGAATCTGGGGAGAGCGAGAAGGTTCTACTGCTCATGGAGAGTGGCGTGAGATTGCATTCTACTATCTACATGCGTGACAAGAGCAACACGCCTTCTGGTTTCACTCTCAAATTGAGGAAGCATATTCGTACGAGGAGGCTCGAGGATGTGCGCCAACTTGGGTACGATCGGATTATTCTCTTCCAATTTGGACTTGGGGAGAATGCGAACTATGTTATATTGGAGTTGTATGCTCAGGGGAATATCCTCCTCACAGATTCTAGTTTTACCGTCATGACTCTGCTGCGGTCTCACAGGGACGATGATAAAGGGCTTGCAATTATGTCACGTCATCGTTATCCTGTTGAAAGTTGTAGAGTTTTTGAGCGAACTACTATTGAAAAGTTGTGGGCATCTCTGGTGTCTTCCAAGGAAGATGATAGCGATGAGACTGTTAAGGTCAATGGAAATGGAAATAATGCTTCTAGTGTAGCAAAAGACAAGCAGGGAACCCAAAAAGGTGGCAAGGTATCAACACTGAAAATTGTCCTTGGGGAGGCACTTGGTTATGGACCTGCACTTTCAGAACATATAATATTAGATGCTGGCCTAATTCCAAGTACAAAAGTTCCCAAAGATAAAACGTGGGATAATGCTACTATTCAGGCTTTGGTCCAAGCTGTTGTGAAATTTGAAGATTGGATGCAGGATGTTATTTCAGGTGAAGTCGTCCCTGAAGGATACATTGTGATGCAGAACAAAAATTTGGGGAACAATTCTTCAATATCTCAGCCTGGAAGTGTTAGCCAGATGTATGATGAGTTCTGCCCCATCTTACTCAACCAGTTTAAGTCAAGGGATTATACAAAATTTGAGACATTTGATGCAGCCTTAGATGAGTTCTACAGCAAAATTGAGAGTCAAAGAGCTGAACAGCAGCAGAAAGCCAAGGAAAACACAGCTTCTCAGAAACTTAATAAGATTCGCCAGGATCAGGAAAATCGAGTACATGCTTTGAGGAAAGAAGCTGATCAATGCGTTAAGATGGCAGAATTGATAGAATATAACTTGGAAGATGTGGATGCTGCTATATTAGCTGTTCGAGTAGCTCTAGCAAAAGGTATGAACTGGGATGACCTTGCTCGGATGGTAAAGGAAGAAAAGAAAGCTGGAAATCCAGTAGCTGGCCTCATCGACAAGCTCCATCTTGAGAGGAACTGCATGACTTTATTGTTAAGCAACAATCTTGATGAGATGGATGATGATGAGAAGACACTCCCTGTGGATAAGGTTGAAGTTGATTTAGCTCTTTCAGCTCATGCCAATGCTCGGAGGTGGTATGAACAGAAGAAAAAGCAGGAGAGCAAACAGGAAAAAACTGTAACTGCCCATGAAAAGGCTTTTAAAGCTGCAGAAAGAAAGACTCGCCTACAGCTTAATCAGGAAAAAACTGTTGCCTCAATTTCACATATGCGCAAAGTCCACTGGTTTGAGAAATTTAATTGGTTCATTACCAGTGAGAACTATTTGGTTATCAGTGGACGTGATGCACAGCAAAATGAGCTGATAGTAAAGCGGTATATGTCAAAGGGAGACCTTTCCAACATAGCTAATGCTATTCAATTGCAAATTGTGGGACTTGAGTCCACATTGAAAGTATGGGTTTGTACTGTGCGGGATCATCGGATGTATGTACATGCTGATCTGCATGGAGCTTCTAGTACTGTTATCAAGAATCACAAGCCTGTTCAGCCAGTTCCACCACTGACCCTAAACCAAGCAGGATGTTTCACAGTCTGCCATAGCCAGGCATGGGATTCAAAAATTGTTACTAGTGCCTGGTGGGTTTTTCCTCATCAGGTTAGTAAAACAGCTCCTACAGGTGAATATCTGACAGTAGGGAGTTTCATGATCCGGGGAAAGAAAAATTTTCTTCCACCACACCCTCTTATCATGGGTTTTGGCCTACTGTTTCGCTTGGATGAGAGTTCATTAGGATCACATTTAAATGAACGAAGAGTGAGAGGAGAGGAGGAAGCAACAGATGATTATGAAAATGCTAATCTCGAAGACAAATCTGATTCAGAATCTGAGAAGGATGTTGATATAAAATCTGTCACTGACTCAGAAATGAATGGTAACTTGTCTGCAGATTCACACAAACCCCTATCAGAAGACTTTTCCAAAGATTCATCTCAAACTGGTTTGGCTACTATCAGCTCCAAAAAGGAAATTTCACGTGATCTTCCTGTGAAAGAGACAAGTACATCAAATATGTTTGATAGGGAGATATTATCAGACACTAGCAGAGATTGCTTAGTTGCTGTCCCCCCTCAACTTGAGGAACTTATTGACCAAGCTCTGGAACTTGGATCTGTTGCTAAACCAAGTAAGCTTTATGGAACTGAGAACTCTCAAATTGATTTAGGCAGTGATAAACATTTGGAACAAAGTAAAGCAGCTGTTAGGGATAAACCTTACGTATCAAAAGCTGAGAGACGAAAGCTTAAAAAAGAACAGAAACATGAAGATACAGATTCAAATGTTGAACATGGTAAGGATGAACCGAAACTGAAAGGTATTTCTGCAAATCTACCTGCAAAGGAAGATCAAAATGTGAAAAAAGGTGGTGGTCAAAAAATCAGCCGTGGGCAGAAGGGAAAATTGAAAAAGATAAAGGAGAAGTATGCTGACCAGGATGAGGAAGAACGGAACATCCGAATGGCATTGTTGGCTTCTTCTGGAAAATCAATCAAGAAGGAAGAGACGTCATCTGAAAATGATGCATTAGACAAAGGGAAAAAATCTGGCAACGGTCCTGTTGAAGCCCCAAAAATATGTTACAAGTGTAAGAAGCCAGGTCACTTGTCTCGGGATTGTAAGGAACAATCAGATGATCTGATGCATAGGAATGCAATTGGTGAAGCTGAAGAAAATCCCAAAATGACTGATATTGAAACTTCCCAAGCAGACAGGGTGACAATGGAAGAAGATGATATTCATGAAATAGGAGAAGAAGAAAAAGAAAAACTAAATGATGTGGATTACTTGACTGGGAATCCACTTCCTAATGACATTCTCTTGTATGCTGTTCCTGTCTGTGGTCCTTACAGTGCACTTCAGTCTTACAAATATCGGGTGAAGATAATTCCTGGACCAGCGAAAAAAGGGAAAGCTGCAAAAACTGCAATGAACTTGTTCAGCCACATGTCAGAAGCAACAACCAGAGAGAAGGAGTTGATGAAGGCCTGTACAGATCCTGAGCTAGTTGCTGCAATTATTGGTAATGTGAAAATATCAGCAGCCGGCCTTACTCAATTGAAGCAAAAGCAAAAGAAAAGCAAGAAAAGCAGCAAACAAGCTTGA 3489 0.4173 MVKVRMNTADVAAEVKCLRRFIGMRCSNVYDLSPKTYVFKLMNSSGVSESGESEKVLLLMESGVRLHSTIYMRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGENANYVILELYAQGNILLTDSSFTVMTLLRSHRDDDKGLAIMSRHRYPVESCRVFERTTIEKLWASLVSSKEDDSDETVKVNGNGNNASSVAKDKQGTQKGGKVSTLKIVLGEALGYGPALSEHIILDAGLIPSTKVPKDKTWDNATIQALVQAVVKFEDWMQDVISGEVVPEGYIVMQNKNLGNNSSISQPGSVSQMYDEFCPILLNQFKSRDYTKFETFDAALDEFYSKIESQRAEQQQKAKENTASQKLNKIRQDQENRVHALRKEADQCVKMAELIEYNLEDVDAAILAVRVALAKGMNWDDLARMVKEEKKAGNPVAGLIDKLHLERNCMTLLLSNNLDEMDDDEKTLPVDKVEVDLALSAHANARRWYEQKKKQESKQEKTVTAHEKAFKAAERKTRLQLNQEKTVASISHMRKVHWFEKFNWFITSENYLVISGRDAQQNELIVKRYMSKGDLSNIANAIQLQIVGLESTLKVWVCTVRDHRMYVHADLHGASSTVIKNHKPVQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVFPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEATDDYENANLEDKSDSESEKDVDIKSVTDSEMNGNLSADSHKPLSEDFSKDSSQTGLATISSKKEISRDLPVKETSTSNMFDREILSDTSRDCLVAVPPQLEELIDQALELGSVAKPSKLYGTENSQIDLGSDKHLEQSKAAVRDKPYVSKAERRKLKKEQKHEDTDSNVEHGKDEPKLKGISANLPAKEDQNVKKGGGQKISRGQKGKLKKIKEKYADQDEEERNIRMALLASSGKSIKKEETSSENDALDKGKKSGNGPVEAPKICYKCKKPGHLSRDCKEQSDDLMHRNAIGEAEENPKMTDIETSQADRVTMEEDDIHEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYSALQSYKYRVKIIPGPAKKGKAAKTAMNLFSHMSEATTREKELMKACTDPELVAAIIGNVKISAAGLTQLKQKQKKSKKSSKQA 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01146 1162 Pfam NFACT N-terminal and middle domains 10 523 - -
Vian6g01146 1162 SUPERFAMILY Retrovirus zinc finger-like domains 978 1007 IPR036875 GO:0003676|GO:0008270
Vian6g01146 1162 MobiDBLite consensus disorder prediction 194 213 - -
Vian6g01146 1162 Pfam NFACT protein C-terminal domain 1048 1141 IPR021846 -
Vian6g01146 1162 Pfam NFACT protein RNA binding domain 599 681 IPR008532 -
Vian6g01146 1162 Pfam NFACT protein RNA binding domain 540 574 IPR008532 -
Vian6g01146 1162 Coils Coil 363 383 - -
Vian6g01146 1162 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Vian6g01146 1162 MobiDBLite consensus disorder prediction 710 793 - -
Vian6g01146 1162 MobiDBLite consensus disorder prediction 850 899 - -
Vian6g01146 1162 MobiDBLite consensus disorder prediction 845 932 - -
Vian6g01146 1162 Pfam Zinc knuckle 987 1003 IPR001878 GO:0003676|GO:0008270
Vian6g01146 1162 MobiDBLite consensus disorder prediction 960 976 - -
Vian6g01146 1162 MobiDBLite consensus disorder prediction 957 984 - -
Vian6g01146 1162 MobiDBLite consensus disorder prediction 189 213 - -
Vian6g01146 1162 SMART c2hcfinal6 987 1003 IPR001878 GO:0003676|GO:0008270
Vian6g01146 1162 Gene3D - 983 1036 - -
Vian6g01146 1162 MobiDBLite consensus disorder prediction 748 762 - -
Vian6g01146 1162 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 1 574 - -
Vian6g01146 1162 ProSiteProfiles Zinc finger CCHC-type profile. 988 1003 IPR001878 GO:0003676|GO:0008270
Vian6g01146 1162 MobiDBLite consensus disorder prediction 710 747 - -
Vian6g01146 1162 FunFam nuclear export mediator factor Nemf 6 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01146 Vian-Chr6 29049954 29059246 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01146 K24971 - gmx:100807437 1923.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01146 6 29049954 29059246 Vian6g01146 6 29049954 29059246 ECH