Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01113 ATGGCCACTGGACAACTTTTCTCACGTACTACACAAGCTTTATTTTACAACTACAAGCAACTTCCCCTCCAGCAGATGCTTGATTTTGACTTCCTTTCTCGAAGGGAAACACCATCAGTTGCTGGAATCATTAACCCTGGTTCTGAAGGACTTCAAAAGATCTTCTTTGGTCAGAAGGAAATTGTCATCCCAGTTCATGCAACCATTGAAGGAGCTTGTGCTGCACATCCTACCGCTGATGTCTTCGTCAACTTTGCTTCACACGGTGGTGGTGGATCGTCGATGTGTGCACTGAAGCAGGCAACAATTAGAGTTGTTGCTGTGATGGGTGAAGGATTAGCTGAGGCAGACACTAAGCAATTGATTTCGTATGCCAGTGCAAATAATAAGGTTGTTATTGGTCCAGGAACTGTTGGAAGCATGCAAGCAGGTGCTTTTAAAATTGGTGACACAGCTGTAACAATTCAAAATATAATTCACTGCAAACTCTACAGACCCGGATCTGTTGGATTTGTTTCTAAATCTGTATCCATTGCCATTGGAGGAGATGTTTGCCCTGGCTCCACACTTTTTGACCATGTTTTACGGTTTAACAACATACCACAGATTAAAATTATGGTAGTAGTTGGAGAGCATGATGGGTGTGATGAGTATTCCATAGTGGAAGCCCTAAAACAGGGGAAAGTATCAAAGCCTGTGGTTGCCTGGGTTAGTGGGAGATGTGCAGGGCCCTTCAAATCTGCAGCAGAATTTGGTGAAGCAGGAGATAAAAGTGGTTGTGAGTTGGAGTTTGCTCGAGCAAAGAATCAGGCACTAAAGGACGCTGGAGCTGTTGTTCCCACATCATATCAAACTTTTGAAACTGCACTTAAGGAAACATTTCACAAATTGGTTGAAGAAGGTAAAATCACACCAGTCAAGGAAATCACTCCTCCTCCAATCCCTGAGGACCTCAGCTCTGCAATTAAGAGTGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACCATTTCTGATGAGAGGGATCTGGTTGCTAAACTAAGGTTTTTCTTGCAATGTTTTACTGAAGGAGAGGATCAATGCTATGGTGGTGTATCCATGTCTTCCATTATCGAAAAAGGATATGGTGTCGGTGGTGTTATCTCTCTTTTGTGGTTTAAACGCAGCCTTCCTCATTACTGTACTCAATTTATTGAGATGTGCATAATGCTATGTGCCGACCATGGTCCTTGTGCCTCCGGAGCTCATAATACTATCGTGACAGCGAGGGCAGGGAAGGACCTAATTTCCTGTCTTGTATCAGGTTTGCTTACGATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGCTACTTTAAGGATGCTCATGACAGTGGACTTACACCTTATGAGTTTGTTGAAGGTATGAAGAAAAAGGGGATTCGTGTGCCAGGAATAGGACACAGGGTAAAGAATAGGGACAGGAAAGACAAGCGAGTTGAGCTGCTACAAAAGTTTGCACGGACACATTTTCCTTCTGTTAAATACATGGAATACGCCGTTGAGGTTGAAGCCTACACCCTCTCAAAGGCAAAAAATTTAATTCTTAACATCGATGGCGCCATTGGGTCTATTTTCTTGGATCTTTTTGCTGGCAGTGGAATGTTCACTGAGCAAGAGATTGATGAAATTGTGAAGATTGGGTATCTGAATGGCTTCTTTGTGCTGGCACGCTCCATTGTTTTGGACCTTTCTGGCTTCTTTATCTCATGCACTTATGGTCCAAAGAGTTCCATTTTGAGTGGTCCTCGTATGCACACCTTTGACCAAAAGAGACTGAAGCAACCTCTTTATCGACACCCATGGGAGGATGTTGTCTACACAACGTGA 1875 0.4357 MATGQLFSRTTQALFYNYKQLPLQQMLDFDFLSRRETPSVAGIINPGSEGLQKIFFGQKEIVIPVHATIEGACAAHPTADVFVNFASHGGGGSSMCALKQATIRVVAVMGEGLAEADTKQLISYASANNKVVIGPGTVGSMQAGAFKIGDTAVTIQNIIHCKLYRPGSVGFVSKSVSIAIGGDVCPGSTLFDHVLRFNNIPQIKIMVVVGEHDGCDEYSIVEALKQGKVSKPVVAWVSGRCAGPFKSAAEFGEAGDKSGCELEFARAKNQALKDAGAVVPTSYQTFETALKETFHKLVEEGKITPVKEITPPPIPEDLSSAIKSGKVRAPTHIISTISDERDLVAKLRFFLQCFTEGEDQCYGGVSMSSIIEKGYGVGGVISLLWFKRSLPHYCTQFIEMCIMLCADHGPCASGAHNTIVTARAGKDLISCLVSGLLTIGPRFGGAIDDAARYFKDAHDSGLTPYEFVEGMKKKGIRVPGIGHRVKNRDRKDKRVELLQKFARTHFPSVKYMEYAVEVEAYTLSKAKNLILNIDGAIGSIFLDLFAGSGMFTEQEIDEIVKIGYLNGFFVLARSIVLDLSGFFISCTYGPKSSILSGPRMHTFDQKRLKQPLYRHPWEDVVYTT 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01113 624 SUPERFAMILY Citrate synthase 177 619 IPR036969 GO:0046912
Vian6g01113 624 FunFam ATP-citrate synthase subunit 1 450 543 - -
Vian6g01113 624 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 135 IPR036291 -
Vian6g01113 624 FunFam ATP-citrate synthase beta chain protein 2 136 - -
Vian6g01113 624 Pfam Citrate synthase, C-terminal domain 384 551 IPR002020 GO:0006099|GO:0046912
Vian6g01113 624 Gene3D Citrate Synthase, domain 1 361 459 IPR016142 -
Vian6g01113 624 Gene3D - 2 134 - -
Vian6g01113 624 Gene3D - 135 303 IPR016102 -
Vian6g01113 624 PANTHER ATP-CITRATE SYNTHASE 5 623 IPR002020 GO:0006099|GO:0046912
Vian6g01113 624 CDD CCL_ACL-C 364 622 - -
Vian6g01113 624 Gene3D - 460 544 IPR016143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01113 Vian-Chr6 28655667 28663011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01113 1 623 Acyl Lipid Metabolism Gene Families AT5G49460 73.872 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01113 K01648 - gmx:100795745 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01113 6 28655667 28663011 Vian6g01113 6 28655667 28663011 ECH
Vian1g00347 1 3084501 3088598 Vian6g01113 6 28655667 28663011 PCT