Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01111 ATGGGGAAGTTCATGAAGAATAAGGAAGTAGAATATGTGGGAGGAGAAATACATGTTATAAAAGGGATTGATCTCGACATGTGGTCTTACTTTGAAGCAGTGGGATTTGTTAAAGAATTCAAGTATGATGCAGGCTTCAAGCTATGGTGGAAGGGGTCGAAACAAAAGGCCATGAACAACCTTAGAACACTCAAAGATGACAATGAAGCAATGTTGTTGGCTGTATATGCAGAGGAAAATAACGATGAGGTTGAAATCTATGTCCAACGTCTTCAACCCAGCATGCACAGTTCCACCCCAGAGGCAAACACCAAGAACAAGTCTACTGCTGACAACTTGAAGAGCATAGTCAACGCTCTCGTGCTTCCTTCCATTTCATCTTCTCCACTTCACTCTCTCCACAAAGGTAACTGGGTCAAGCTCATTTGTGGTGCAAGCTTTGAGGATGTTGTTGATATCAGAAATCTCAGCCTGGTTTACACTCTTGCTGGAGTTGACTGCATTGACTGTGCCGCTGATGCAGCAGTTGTTAGTGCTGTGAATGAAGGAATTGAAGCTGCAAGAGATATTGTGTGCGTTAGGAGGCCGTGGGTGATGATCAGTGTCAATGATGATAAAGATCTTCATTTTCGAAAAGCCGAATTTGATCCAGAGGAATGTCCAGCAGACTGTTCACGGCCTTGTGAAAATGTGTGCCCTGCTAATGCAATATCATTCCTTGGGAAATCTTCGGGAATTTCATGTAATACTGAAGCAACAAGTGTACTGAAGGATGGAGTCATAACAGAACGCTGCTATGGCTGTGGTCGCTGTCTTCCAGTTTGCCCCTATGATAAAATAAGAGAGGTAACATATGTAAGAGATGCTGTTACAACTGCTGATCTAATCCAGAGAGATGACATTGATGCTATGGAGATACATACAAGTGGAAGACAGAGTAATTTGTTCAAACAACTCTGGAGTGCTCTGGGAGATTCAGTAGGGTATTTGAACCTTGTAGCTGTTAGCTTACCTAATGGTGGTGACTCAACAATATCCTCCATGAACTATATGTTCTCCATCATGAAACCCAATCTTCAAAGCTTCAACTTATGGCAGTTAGATGGTCGTCCTATGAGTGGAGATATTGGGAGAGGAGCAACAAAGGAATCAATTGCCTTTGCTGTTCAACTGGCTAAGGCAAAAGAAAGGCCTCCTGGTTTTCTTCAACTTGCTGGTGGAACCAATGCTCACACAATTGAAGGGTTGAAAAAAGAGGGACTCTTTCAAACAACTATTAATGAATATTTGCATGATGATGAATCAGCAATAAACTCATCTGGTTCACCACATGCTTTGATTGGTGGTATAGCATACGGTGGCTACGCACGGAAGATTGTTGGTAGAGTGTTGAGATCAATGCAATCAGAACATGGTGGAGCTGCTTCAATTGAGGATCATTCTGAGTATCTCTTGATGGCTCTTAAGGAAGCACTTGCTTTGGTGGGACCTGTTAAATGTCTATGA 1506 0.4243 MGKFMKNKEVEYVGGEIHVIKGIDLDMWSYFEAVGFVKEFKYDAGFKLWWKGSKQKAMNNLRTLKDDNEAMLLAVYAEENNDEVEIYVQRLQPSMHSSTPEANTKNKSTADNLKSIVNALVLPSISSSPLHSLHKGNWVKLICGASFEDVVDIRNLSLVYTLAGVDCIDCAADAAVVSAVNEGIEAARDIVCVRRPWVMISVNDDKDLHFRKAEFDPEECPADCSRPCENVCPANAISFLGKSSGISCNTEATSVLKDGVITERCYGCGRCLPVCPYDKIREVTYVRDAVTTADLIQRDDIDAMEIHTSGRQSNLFKQLWSALGDSVGYLNLVAVSLPNGGDSTISSMNYMFSIMKPNLQSFNLWQLDGRPMSGDIGRGATKESIAFAVQLAKAKERPPGFLQLAGGTNAHTIEGLKKEGLFQTTINEYLHDDESAINSSGSPHALIGGIAYGGYARKIVGRVLRSMQSEHGGAASIEDHSEYLLMALKEALALVGPVKCL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01111 501 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 256 285 IPR017896 -
Vian6g01111 501 Gene3D - 218 296 - -
Vian6g01111 501 PANTHER PHOTOSYSTEM I IRON-SULFUR CENTER-RELATED 133 293 - -
Vian6g01111 501 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 211 242 IPR017896 -
Vian6g01111 501 Pfam Iron-Sulfur binding protein C terminal 295 496 IPR021039 -
Vian6g01111 501 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 265 276 IPR017900 -
Vian6g01111 501 SUPERFAMILY 4Fe-4S ferredoxins 202 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01111 Vian-Chr6 28585599 28598633 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01111 - - var:108342585 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01111 6 28585599 28598633 Vian6g01111 6 28585599 28598633 ECH