Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01102 ATGGCCGACAAGTACAACCTCAAGAACCCCGCCGTCAAGCGGATCCTCCAGGAGGTCAAGGAGATGCATTCCAACCCCTCGGACGATTTCATGAGCCTACCTCTCGAGGAAAATATATTTGAGTGGCAATTTGCGATCAGAGGGCCTCGTGATACTGAATTTGAGGGTGGTATTTATCATGGACGGATCCAGCTGCCTTCAGAGTATCCATTCAAACCCCCTTCGTTTATGTTGTTGACACCTAATGGTCGTTTCGAGACTCAAACCAAGATTTGCTTGAGCATTTCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGCGTGAGGACTGCTCTAGTTGCACTGATTGCTTTCATGCCAACCAACCCAAATGGTGCATTGGGATCTTTAGACTACAAGAAAGAAGAGAGGCGTACCCTGGCTCTAAAATCTCGTGAAGGTCCTCCTAAATTTGGGACTCCTGAACGTCAAAAGCTGATTGATGAGGTAAAATGTTGCTTATTGTTTTCACCTCAGTTTGCGTTTTCTGTAATATATTGTGCTGCTGAATGGACTTGGTTATCCCAGATACACGAGTACATGTTAAGCAAGGCACCCCCAGTTCCTCAACCAAGCGCAACAGAGGCTTCCGATGAGCACCCCAGAAATGAGGAGGCTGAGGCCCTAGTTGATTCACCTAATTCTGAGTCCTTACCAGCTGGAGAGAGGATTCCAGATCAAGAAGGTGATGGAATTGTTGAAGAACAAGAAGTCCTTGCAAATGCTAACCCTGCAGGAGTTGAAGTATCAAGGGAGATTCAATCAAATGTTTCAAGGAATGAGCTGCCCCAAAGGTCAGATACAACTGCAAGGGTTCACAATCCCAGGCCAGAGACAAGGGTCCAGAAACCTGATGATAGGCTGTTCACGTTGGCAGCTATCGGACTTGCTATTGCTATTGTGGTCCTTTTGCTCAAAAAGTTCATTAAATCTACCGAACATGGGGCACTTTTCTCCAATGGATCTTGA 1011 0.4629 MADKYNLKNPAVKRILQEVKEMHSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRTLALKSREGPPKFGTPERQKLIDEVKCCLLFSPQFAFSVIYCAAEWTWLSQIHEYMLSKAPPVPQPSATEASDEHPRNEEAEALVDSPNSESLPAGERIPDQEGDGIVEEQEVLANANPAGVEVSREIQSNVSRNELPQRSDTTARVHNPRPETRVQKPDDRLFTLAAIGLAIAIVVLLLKKFIKSTEHGALFSNGS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01102 336 MobiDBLite consensus disorder prediction 200 241 - -
Vian6g01102 336 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Vian6g01102 336 Gene3D Ubiquitin Conjugating Enzyme 2 163 IPR016135 -
Vian6g01102 336 FunFam ubiquitin-conjugating enzyme E2 32 1 172 - -
Vian6g01102 336 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 10 127 - -
Vian6g01102 336 SMART ubc_7 13 165 - -
Vian6g01102 336 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Vian6g01102 336 SUPERFAMILY UBC-like 11 133 IPR016135 -
Vian6g01102 336 CDD UBCc 12 147 IPR000608 -
Vian6g01102 336 MobiDBLite consensus disorder prediction 265 284 - -
Vian6g01102 336 MobiDBLite consensus disorder prediction 265 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01102 Vian-Chr6 28481336 28483726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01102 1 334 Miscellaneous Gene Families AT3G17000 58.997 1.38e-124 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01102 K10578 - gmx:100798396 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01102 6 28481336 28483726 Vian6g01102 6 28481336 28483726 ECH