Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00547 ATGGAGGAACAAATCCCGTTTAAGAATCTCCATAGCCGAGAGTATTCGGGTCACAAGAAGAAGGTGCACTCTGTGGCGTGGAATTGCATTGGCACAAAACTTGCTTCTGGCTCTGTGGACCAAACTGCGCGAATATGGCATATTGAACCACATGGGCATGGCAAGGTCAAAGATATCGAACTGAAAGGTCACACTGATAGTGTGGATCAGCTATGCTGGGACCCCAAGCATGCTGATTTGATTGCAACTGCATCGGGTGACAAGACTGTTCGCTTGTGGGATGCTCGAAGTGGAAAATGCTCACAACAGGCAGAACTTAGTGGGGAGAATATCAACATCACTTACAAACCTGATGGGACTCATGTAGCTGTTGGTAACAGGGATGATGAATTAACAATACTGGATGTTCGGAAGTTCAAACCAATTCACAGGCGCAAGTTCAATTATGAGGTAAATGAGATTGCTTGGAACATGACAGGCGAGATGTTCTTTCTAACAACAGGAAATGGGACTGTGGAAGTACTGTCTTACCCATCTCTTCGGCCTCTTGACACTCTCATGGCTCATACAGCTGGTTGTTATTGCATTGCAATTGATCCAGTAGGAAGATATTTTGCTGTTGGAAGTGCTGATTCCCTTGTCAGCCTGTGGAACATCTCAGAGATGCTCTGCGTGCGTACCTTCACAAAGCTGGAGTGGCCTGTCCGGACAATTGGCTTCAATTATACTGGGCATTTAATTGCTTCTGCAAGTGAAGACTTGTTCATTGATATAGTAACTATTTTTGATGGCCAGAAGTTTAGTGGGATGGACTGCACCCGGTCATACAACGATATCCATTGGGCATATTTGACCAAACTTGAGGGTAATGCTTCTGATTTGTTTAAGAAATTTAAGGCTCTTTTGGTCTGCTTGGCTCCAAAAAGCAAGGAGTCTACCCTCTTGTAG 948 0.4473 MEEQIPFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLRPLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWNISEMLCVRTFTKLEWPVRTIGFNYTGHLIASASEDLFIDIVTIFDGQKFSGMDCTRSYNDIHWAYLTKLEGNASDLFKKFKALLVCLAPKSKESTLL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00547 315 SMART WD40_4 221 263 IPR001680 GO:0005515
Vian6g00547 315 SMART WD40_4 54 94 IPR001680 GO:0005515
Vian6g00547 315 SMART WD40_4 8 47 IPR001680 GO:0005515
Vian6g00547 315 SMART WD40_4 179 218 IPR001680 GO:0005515
Vian6g00547 315 SMART WD40_4 138 176 IPR001680 GO:0005515
Vian6g00547 315 SUPERFAMILY WD40 repeat-like 9 271 IPR036322 GO:0005515
Vian6g00547 315 PANTHER THO COMPLEX SUBUNIT 3 THO3 5 281 IPR040132 GO:0006406
Vian6g00547 315 FunFam THO complex subunit 3 1 165 - -
Vian6g00547 315 CDD WD40 13 256 - -
Vian6g00547 315 Gene3D - 148 286 IPR015943 GO:0005515
Vian6g00547 315 ProSitePatterns Trp-Asp (WD) repeats signature. 81 95 IPR019775 -
Vian6g00547 315 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Vian6g00547 315 Gene3D - 6 147 IPR015943 GO:0005515
Vian6g00547 315 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 220 - -
Vian6g00547 315 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 99 - -
Vian6g00547 315 ProSiteProfiles Trp-Asp (WD) repeats profile. 15 49 IPR001680 GO:0005515
Vian6g00547 315 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 103 IPR001680 GO:0005515
Vian6g00547 315 Pfam WD domain, G-beta repeat 182 218 IPR001680 GO:0005515
Vian6g00547 315 Pfam WD domain, G-beta repeat 12 46 IPR001680 GO:0005515
Vian6g00547 315 Pfam WD domain, G-beta repeat 60 94 IPR001680 GO:0005515
Vian6g00547 315 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Vian6g00547 315 PRINTS G protein beta WD-40 repeat signature 81 95 IPR020472 -
Vian6g00547 315 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Vian6g00547 315 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 15 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00547 Vian-Chr6 21003335 21021020 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00547 151 263 Miscellaneous Gene Families AT5G08390 23.009 6.66e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00547 K12880 - gmx:100812126 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00547 6 21003335 21021020 Vian6g00547 6 21003335 21021020 ECH