Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00544 ATGCATCTCTATAATGCATGGCTTCCGCCGCCTGTGGCCGCTCAGACAGCCGCAGAGCGCGACTCCTTCACTCGCGTCATCGCCGCCGTCAAGTCCTCCTTCCGACCCGACGATCCCGAATCTGTCTTCTCCACTCTCAAATTCATATCCGTCCTCGACCTTTTCATAAAGGCAAAAAGTGATGTTTCTTTGGAGGATGTTCGCGATCTTGCTCAGATGGGCCTTGAGATATTTCATGTTGCCCGTAATAAGCTTTATGCTCAGGTTAGATGGGGAAATTTAGTGGTCAGATTACTCAACAAATATAGGAAAAAGATTACACTAAGTGTTGGATGGAGGCCCCTGTATGATACACTGATTAGCACACATTTTACTAGAAGTACAGGTCCAGAAGGTTGGAGAATTAGACAACGACACTTTGAAACTATAACTTCCCTTGTCCAGTCCTGCCGGAGATTCTTCCCATCAGGTTCTGCCTTTGAGATATGGTCTGAGTTTAAATCTTTGTTGCAAAACCCGTGGCATAATTCATCCTTTGAAGGTTCAGGCTTTGCAAGACTCTTTCTCCCAACAAATCTGGATAATGAGGCCTTTTTTACCCATGATTGGATAACAGAGTGTATAGACTTGTGGGAATCTATACCAAATTGCCAATTCTGGAACAATCAATGGGCAGATGTCATAGCTCGCGTTGTAAAAAATTACCACAATGTTGACTGGGACTGCTTCTTGCCTTTGCTTTTTGCTAGATACTTGAATATGTTTGAGGTACCTGTTGCAAATGGAAGTGGTTCATACCCCTTTTCACTAGATGTCCCAAGAAACACTAGGTTCTTGTTCTCTAATAAAACTTCTACTCCTACAAAGGCAATCTCCAAATCAATAGTATATTTACTAAAACCTGGTAGTCCATCACAGCAGCACTTTGAAAAATTGATCAACATTTTGGAACAATATTATCATCCCTCAAATGGAGGTCGATGGACCTACTCCTTGGAGCGGCTTTTGTTTCATTTGGTGTTTCAATTTCAAAAGCGTCTACAGAATGAACAGTTGAGCACAAATAATAGAAGACCCAGTGAACAGCATCTTGGGGAATCAGAGAGGGTTTTCTTTGTTAATTCAGTGCTTAAGTTAATTGACCGTGGTCAATACAGCAAGAATGAACATCTCTCTGAGACAGTTGCTGCTGCCACTTCTATACTGTCCTATGTAGAACCCTCATTAGTTCTGCCATTTGTGGCATCTCGGTTCCATATGGCCCTTGAGACGATGACTGCCACCCATCAGTTGAAAATTGCAGTTATGTCAGTGGCATTTGTTGGGCGTTCACTGTTTTATACATCTGTATCAGCTTGCTCCACGAAGCCAGTTGATCTTGGTGGTGTTGGTGATGAAACATTTGTTGATCTTGTGGGGGTTTCATTATCTAATGCATTACTTGGCATGGATGCTAATGACCCTCCAAAAACCTTGGCTACCATGCAATTAATTGGTTCCATATTTTCAAATTTGGCTTTATTGGATGATAAAATTGATGACCTATCATTTATGCCTATGGTCCGCTTTTCAGAGTGGCTGGATGAGTTCTTATGCCGTCTGTTTTCCTTACTTCAACACTTGGAACCCAGCAGTGTTATAAATGAAGGTCTGCAGTCATCAGCAACAACAGGAACTTTCCTAGTTGATGATGGTCCTTACTACTTCTGTGTGCTTGAAATTCTGTTTGGAAGGCTTTCTAATTCACTGTATAATCAGGCTCTGAAGAAAATTTCCCACTTTGTGAAGACAAATATTCTTCCTGGTGCTGTTGCAGAAGTTGGACTGCTCTGTTGTGCCTGTGTTCACTCGAACCCAGAAGAAGCAGTTAGTCAGCTTGTTGAGCCAATATTACTTTCTGTGATATCTTCTTTGAAAGGAACACCACGCACTGGATTTGGAGGAGGAGGAACTTTTGACGCTTCTGCTTCATCAAAGGTTAGGTCCACAATTTCACCAGCTCTTGAGGCTGCAATTGACTATCAACTTAAGATATTGTCAGTTTGCATCACATATGGAGGTCCAGCACTCCTTCGCTACAAGGATCAATTCAAAGAAGCTGTCTTCTTTGCTTTTGACTCACCATCTTGGAAGGTTAATGGGGCTGCTGATCATCTTCTTCGGTCTCTTCTAGGAAGTCAGATTCATTATTATCCAATTGATCAGTATAAGTGTGTTCTTAGGCACCCTGATGCTGTTGCCCTTGAAGAATGGATTAGCACAAAAGGTTTTTCCCCTGAGGAAAGCTTTATCCCAAAATGGCATATTCCTTGTGATGAAGAAATTCATTTTGCAAATGAGCTTATAGACATTCACTTCCAGTCAGCTTTGGATGATCTGTTGAAAATATGCCAGTCTAAAATCCATGCAGACCAAGGGGATGAGAAAGAGTACTTGAAAGTGACTCTTCTACGTATTGAATCAACATTGCAAGGACTTTTTTCATGTTTGCCTGACTTTGTTCCAGACTCTAGAAATGGAATGAATGAAGATTCAAACAATCTGTTTTTAATTGCTGGGGCTACAGGTTGTACTGTTGGAAGTACTGCTCTGAGAGAAAAGGCTGCTGAGATTATACATATAGCCTGCAAATATGTCCTGGAGAAAAAATCAGATGACAGCATTCTGTTGATACTGATTATTCGCATCATTGATGCTTTAGGAAACTATGGGAGTTTGGAATTTGATGAGTGGTCTAGTCATAGACAGGCTTGGAAATTAGAATCTGCTGCCATAATAGAACCACCCATTAATTTCATTGTATCATCTCATTCTAAAGGAAAGAAAAGACCAAGGTGGGCACTCATCGATAAGGCATTTATGCACAGTACCTGGAGGTCTTCACAAGCATCCTATCATCTTTACCGTACAAGTGGGAATTTCCGCCCATCTGATCATGTGACTATTTTGATGGACGATTTGTTGACTCTCTCGCTGCATAGCTATGAAACTGTTCGCCTGCTTGCAGGAAAATCTCTAGTGAAGCTGATTAAGAGATGGCCATCTTTGATTTCAAAATGTGTTATCACTCTTACGAAAAACTTGCAGGATCTCAATGCCGAGGAATATGCAGTCTTGGGTTCTTGTTCAGTCCTTGCCTCACAGACAGTTCTCAAACATCTGACAACGGATCCAAAGTCATTTTCTTCATTTATCTTGGCAATTCTTTCAAGTTCTCATCATGAATCTTTGAAAGCTCAGAAAGCAATTAATGAGCTTTTTGTGAAGTACAACATTCAATTTTCTGGAGTATCTAGAAGCTTCTTCAGGATCTCAGACAAAGAAAATCATACTGGTGGACTAGAGTTTTCAGATTTGGTTTCTCAGATTGGTTCAATGAGTTTTGATTCTACTGGCTTGCATTGGAGGTATAATTTGATGGCTAACAGAGTTCTGCTTCTTCTGGCTTTGGCATCTCGGAACCATCCAAATTCATCATCTAAAATTCTGAGTGAAACTGCTGGACACTTTCTGAAGAATTTGAAAAGTCAACTTCCTCAGACAAGGATACTTGCAATTTCAGCTTTGAATACACTATTAAAGGAATCGCCATATAAGTCGTCTCTTGATGCGAAATCAGCTGAATTTGAGGATTTGCAAGACCATGTCAAATCATCCCTTGAAGGAACTTTAACTCAAACTTTTCAGGAGGAGGGTTTCTTCAATGAGACACTGACTAGTCTTTCTCATGTTCATATAATAACTGATACTGAAACTGCTTCAAGAGGAAGTCAGGGAGATTCGAGTTTCCAAAGCTTAGCAGACAAATCCATAACTCGTTTTTATTTTGAATTTTCGGCTTCATGGCCACGTACACCAAGTTGGATCTCCTTTTTAGGAAGTGATACATTCTACTCAAGTTTTGCACGCATTTTTAAACGACTTGTACAAGAATGTGGCATGCCTGTTGTGTTGGCCCTTAAAGGTGCAGTAGATGAGTTTACAACTGCCAAGGAGAGGTCTAAACAATGTGTGGCTGCTGAAGCATTGGCGGGTGTGCTACATTCTGATATTGATGGTTTATCAGGAACATGGGAAAGTTGGCTGATGCCTCAGTTGAAGAATGTCATTTTAACCCAATCTGTTGAATCAGTTTCAGAGTGGGCATCTTGCATACGGTATGCAGTTACTGGTAAAGGGAAGTATGGAACAAGAGTTCCTCTTTTGAGACAAAAAATTCTGGATTCTTTGATGACATCTTTACCCCCAACAGTAGCTACCACTGTAACAACCAAGCGATATGCTTTTCTGGCAGCTGCACTTATAGAAATATCCCCACAGAAAATGCCGGTATCTGAAATTCAGCTCCACAATACACTTCTGAAGGAAGTTCTTGGAAATATGCACCACTCATCAGCCCAAGTGAGGGAGGCTCTAGGGGTTACCCTTTCTGTATTGTGCTCTAACATTAGGCTTTACCATTCGAGTCATCAAGATGGGCGAAGTGACAATGTTGATAGTTTGATGCAAGATGAAAACTGGGTTCATTTTCTTACAGAGCGAGCAGCTGAAGCAGTTGTGAACATTCAGATTGCTACCCAGTCGGATAAAGTAGTGAATCCTGTAGATGGAGGTTCTCAAAATGGGCATGTGGATGGTGATTCACAAGATGACATGAAATGGATGGAAACGCTACTCTACTTCATCATCTCATCCTTGAAGTCAGGGAGATCCTCGTATCTACTTGATGTGCTTGTGGGGCTTCTGTATCCTGTGATTTGCTTGCAGGAAACATCAAATAAGGATTTGTCAACACTAGCCAAGGCAGCATTTGAATTGCTTAAATGGATGATCGTTTGGGAACCTCACCTTCAGAAGGCTGTATCTGTGATTCTCTCTGCTGCCAATGATTCCAACTGGCGGACTAGATCTGCTACATTGACATATCTGCGTACCTTCATGTACAGGCACACTTTTATTCTCTCAAGTTCAAAAAAGCAAGAAATTTGGGAAACTGTTGAGAAGTTACTAGTAGACAATCAAATTGAGGTAAGAGAGCATGCTGCAGCCGTTTTAGCAGGCTTAATGAAGGGCGGAGATGAAGACCTGGCTACAGATTTCCGTAATAGAGCATATAAGGAGGCAAATATTGTACATAAAAGAAGAAAGTCAAGAAATGCACGCTCTGGTTCAACAATAGCATCTGTTCATGGTGCTGTACTCGCTTTGGTTGCTTCTGTATTATCTGCTCCATATGACATGCCCAGTTGGTTGCCTGAACATGTTACACTACTGGCCCGCTTTAGTGGGGAGCCATCCCCTGTCAAATCTACAGTTACTAAAGCTGTTGCAGAGTTCAGGCGGACCCATGCTGATACATGGAATGTTCAGAAAGAGTTATTTACTGAAGATCAACTTGAGATTCTGGCAGACACATCGTCTTCGTCATCGTATTTTGCTTGA 5442 0.4135 MHLYNAWLPPPVAAQTAAERDSFTRVIAAVKSSFRPDDPESVFSTLKFISVLDLFIKAKSDVSLEDVRDLAQMGLEIFHVARNKLYAQVRWGNLVVRLLNKYRKKITLSVGWRPLYDTLISTHFTRSTGPEGWRIRQRHFETITSLVQSCRRFFPSGSAFEIWSEFKSLLQNPWHNSSFEGSGFARLFLPTNLDNEAFFTHDWITECIDLWESIPNCQFWNNQWADVIARVVKNYHNVDWDCFLPLLFARYLNMFEVPVANGSGSYPFSLDVPRNTRFLFSNKTSTPTKAISKSIVYLLKPGSPSQQHFEKLINILEQYYHPSNGGRWTYSLERLLFHLVFQFQKRLQNEQLSTNNRRPSEQHLGESERVFFVNSVLKLIDRGQYSKNEHLSETVAAATSILSYVEPSLVLPFVASRFHMALETMTATHQLKIAVMSVAFVGRSLFYTSVSACSTKPVDLGGVGDETFVDLVGVSLSNALLGMDANDPPKTLATMQLIGSIFSNLALLDDKIDDLSFMPMVRFSEWLDEFLCRLFSLLQHLEPSSVINEGLQSSATTGTFLVDDGPYYFCVLEILFGRLSNSLYNQALKKISHFVKTNILPGAVAEVGLLCCACVHSNPEEAVSQLVEPILLSVISSLKGTPRTGFGGGGTFDASASSKVRSTISPALEAAIDYQLKILSVCITYGGPALLRYKDQFKEAVFFAFDSPSWKVNGAADHLLRSLLGSQIHYYPIDQYKCVLRHPDAVALEEWISTKGFSPEESFIPKWHIPCDEEIHFANELIDIHFQSALDDLLKICQSKIHADQGDEKEYLKVTLLRIESTLQGLFSCLPDFVPDSRNGMNEDSNNLFLIAGATGCTVGSTALREKAAEIIHIACKYVLEKKSDDSILLILIIRIIDALGNYGSLEFDEWSSHRQAWKLESAAIIEPPINFIVSSHSKGKKRPRWALIDKAFMHSTWRSSQASYHLYRTSGNFRPSDHVTILMDDLLTLSLHSYETVRLLAGKSLVKLIKRWPSLISKCVITLTKNLQDLNAEEYAVLGSCSVLASQTVLKHLTTDPKSFSSFILAILSSSHHESLKAQKAINELFVKYNIQFSGVSRSFFRISDKENHTGGLEFSDLVSQIGSMSFDSTGLHWRYNLMANRVLLLLALASRNHPNSSSKILSETAGHFLKNLKSQLPQTRILAISALNTLLKESPYKSSLDAKSAEFEDLQDHVKSSLEGTLTQTFQEEGFFNETLTSLSHVHIITDTETASRGSQGDSSFQSLADKSITRFYFEFSASWPRTPSWISFLGSDTFYSSFARIFKRLVQECGMPVVLALKGAVDEFTTAKERSKQCVAAEALAGVLHSDIDGLSGTWESWLMPQLKNVILTQSVESVSEWASCIRYAVTGKGKYGTRVPLLRQKILDSLMTSLPPTVATTVTTKRYAFLAAALIEISPQKMPVSEIQLHNTLLKEVLGNMHHSSAQVREALGVTLSVLCSNIRLYHSSHQDGRSDNVDSLMQDENWVHFLTERAAEAVVNIQIATQSDKVVNPVDGGSQNGHVDGDSQDDMKWMETLLYFIISSLKSGRSSYLLDVLVGLLYPVICLQETSNKDLSTLAKAAFELLKWMIVWEPHLQKAVSVILSAANDSNWRTRSATLTYLRTFMYRHTFILSSSKKQEIWETVEKLLVDNQIEVREHAAAVLAGLMKGGDEDLATDFRNRAYKEANIVHKRRKSRNARSGSTIASVHGAVLALVASVLSAPYDMPSWLPEHVTLLARFSGEPSPVKSTVTKAVAEFRRTHADTWNVQKELFTEDQLEILADTSSSSSYFA 1813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00544 1813 Pfam Proteasome-substrate-size regulator, mid region 310 507 IPR032430 -
Vian6g00544 1813 Pfam Proteasome-substrate-size regulator, mid region 520 825 IPR032430 -
Vian6g00544 1813 Gene3D - 1302 1709 IPR011989 -
Vian6g00544 1813 SUPERFAMILY ARM repeat 862 1696 IPR016024 -
Vian6g00544 1813 PANTHER PROTEASOME ACTIVATOR COMPLEX SUBUNIT 4 2 1813 IPR035309 GO:0016504|GO:0070577|GO:0070628
Vian6g00544 1813 Pfam Domain of unknown function (DUF3437) 1728 1813 IPR021843 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00544 Vian-Chr6 20920319 20936020 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00544 K06699 - gmx:100781622 3272.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00544 6 20920319 20936020 Vian6g00544 6 20920319 20936020 ECH