Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00533 ATGATGGCTTCCCCAAACAACCACCACCCCAACCCCAACGTCCACCCTCCTCCTCCCTTCGACATGCACTCCTTCTTCAATCCTCCACCCCCTTCGTCCAACCCTAACCCTAACCCTAACCCTAGCCCTTCATCCCAATACCCTCCGCCCTTCCCCGCCGCCGCGCCCTTCCCCTTCCCGGCCTTCGACCTCCCTCTCCACCACCACCGTTCCCTCTCCTTCCCCACGCAGCCCATCCCTCCGCCCTCCAACCCCAACGCCGGTGCTCGCCTCATGGCCCTCCTTAGCAACCCCTCCCCACCGCCCCCTGACTTCGCGGCACCCTCCTCCTCCCCCTCTACCGTCCTCGCCGCCGCCACTGCCGCCGCCGCAGCCCTCACTCGGCTCCCTAGCGGCAAGGTCCCCAAGGGAAGGCATCTCTCCGGGGAGCGCGTATCCTACGACGTGGACATCCGGCTGCCTGGCGAGGTCCAGCCGCAGCTGGAAGTTGCTCCGATCACGAAATATGGGTCGGATCCTAACCCCGTTTTGGGGAGGCAGATTGCGGTGAATAAGTCCTATATATGCTATGGGCTGAAACAGGGGAACATTAGGGTGCTTAACATCCACACTGCTGTCAGGTCTCTCCTCAGAGGCCATACTCAGGATTGCCTGTTAGAGAAGATACCTCCGGGGAATGAAATAATTTTGGATAGGGTCACAGACTTGGCGTTTTTTGCTGAAGATGTTCATCTCTTGGCTAGTGTTGGCACAGATGGCCGTGTCTACGTGTGGAAGATCTCTGAAGGTCCCGATGATGAAGATAAGCTTCAAATTACAGCCAATATTGTTATTGCTATTCAAATAGTGGGGGAGGAGAAAGTTGAACATCCTCAAATTTGCTGGCACTGTCACAAACAAGAGATTTTGATAGTTGGTATGGGAAAACATGTTTTTAGAATTGACACCACAAAGGTTGGAAATGGTGAAGCGGTTGTGGCAGAGGATCCTCCTCTGAGATGTCCTGTTGACAAGCTCATTGATGGGGTTCAGCTGGTAGGCACACATGATGGAGAGGTGACTGATTTATCCATGTGCCAATGGATGACCAATCGATTGGTATCTGCGTCACAGGATGGCACGATAAAGATCTGGGAAGATCGCAAGACACAGCCACTTGAAGTTTTGAGACCACATGAAGGACATCCAGTTTTTTCTGCTACATTTTTTACTGCTCCTCACCAGCCTGATCATATTGTTCTTATCACAGCTGGACCACAAAATAGGGAGGTGAAGCTATGGGTATCAGCAAGTGAAGAAGGTTGGCTGCTCCCAAGTGACACTGAATCCTGGAAATGCACTCAGACGTTGGAGTTGAAGAGTTCAGCTCAACCATCTAGAGATGCTTTCTTTAATCAAGTTGCAGCATTGCCTCATGCAGGTCTACTTTTACTTGCAAATGCCCAGAGGAATGCTATATATGCTGTACATTTAGAATATGGTCCTAATCCAGAATCAACACGCATGGATTATATAGCTGAGTTTACTGTGACCATGCCCATTCTGAGTTTTACTGGGACAAGTGATATACTGCCTCATGGTGAGCATATAGTTCAGGTTTATTGTGTCCAGACACAGGCTATTCAGCAATATGCTTTGGATTTAGCCCAGTGCTTGCCTCCACCATTGGATAATGTGGGACTAGAGAAGTCAGATTCCATTGTTTCCGCTGATGCAATTACTGTTGAAGGATTCCACACTTTAGACTCTTCTGCTTCCAAAATAATGTTACAAGCAGGTAGTACTGAAAATGGACTTGTGCCTAGATACCCTTTAAGCTCTGGCCATGTTGATGTGCCTATTACATCTTCAAACACTGAAGCTAAACCTGTTACATTAACTCCTTCTAGTAGCGAACCTGATGTCATTTGTATTCCATCTCCACCTCTTCCTTTAAGCCCGAGGTTATCTAGGAAACTCTCTGATATCAGGAATCCACAGTCAAATTTGGGTGATCATGTTGGGGAACATCCTGTTAATGATTATTCTGTCGACAGACAAATGGATACCATTCACAGAAACCTCTCTGAGACATTTAATAGTGATTCAAAGAATGATGAAAAGAAAGTGAAGCAGGATCACATTTCTAGTGTACTTAATCCTTCTGTCATGTTTAAGCAACCAACCCATCTAATCACACCATCTGAGATCACAAAGGCTGGTTCCTCCTCTGAGAATAACATAATTGATGGGAAGAGCGAGGGAGAAGGAAAGATGCAGGATGTGGGTAATGCTGAAGTGGAAGTGAAGGTGGTGGGTGAGACAAGATCTAATCAAATTGATGAATTTGGTCGAGGGTCACAACAAAATCCAGTTTCTGATAGTAAAGAAAAAATATTTTGTTCTCAGGCTTCAGATCTTGGTATTGAAATGGCTCGAGAAGGCTGTGTGATAACTGCTGGGGACACATACCTTACAGAGGAATCAGGACAACTTGATTCAACAGGAGCAGTGTCACTAGCTCAACCTCCTGATTCTGGCGAGGATGGACTCCAAGATACGGCAAAAGATGCCCATGAAAAGGTTTCTGACTCATCTACATCTGTGGCTGTGCCGCCATCTCCTGTGTCTAATGCAAAAGGGAAAAGACAGAAGGGTAAAAATTCTCAAGCATCAGGTCTATCTTTCTCATCTCCAAGTGTGTGTAATTCAACTGATTCATCCAATGAACCAAATGGAATTTCTAGCCTTCCGTCTGCAGAAAATGCTTTCCCTCAAATTCTGGCAATGCAAGAATCACTCAATCAGTTATTGACAATGCAAAAAGAGATGCAAAAGCAAATGACAATGATTGTCGCTGTTCCAGTGACAAAAGAAGGTAGAAGGCTTGAGGCTGCCCTAGGGAGAAACATGGAAAAAGCTGTCAAGGCTAACAGTGATGCTTTATGGGCTAGAATCCAGGAGGAGAATGCAAAAAATGAAAAGTTGTTACGAGACCGTATCCAGCAAATTACAGGTCTGATTAGTAACTTTATGAATAAAGATCTACCGGCAATACTGGAGAAAACAGTAAAGAAGGAAATGGCCTCGGTTGGGCAAGCAGTAGTACGTGCAATGTCTCCTGCTGTGGAGAAAATAATATCTTCTGCTATTGTTGAATCCTTCCAGAGAGGAGTGGGTGATAAGACAGTGAACCAACTTGATAAATCAGTTAGTTCAAAACTGGAAGCTACTGTAGCTAGGCAAATCCAAGCACAATTTCAGACAACCGGCAAACAGGTGCTTCAGGAGGCACTCAAATCCAGTTTTGAAACATCAGCGGTTCCTGCCTTTGAAATGTCGTGTAAAGCCATGTTTGAGCAAGTGGATGCTACATTTCAGAAAGGCATGGCTGAACATTCAGCTGCTGTGCAGCAACGACTTGAATCTGCTCCCACTTCTTTGGCAATGACGCTAAGGGATTCCATTAATTCAGCATCATCAATTTCTCAAACTTTGAGTAGAGAAGTGCTTGAGGGCCAGAGAAAGTTAGTAGCACTTGCAGCTACAAGAACAAACTCTGGCACGTTAAATCCTTTGCCGGTCCAGCTGAACAATGGTCCTTTACTTCGTGAAAAGGTTGAGGTTCCCCTGGATCCCACACAGGAGCTAGGAAGGTTGATTTCTGAACGGAAATTCGAGGAGGCTTTCATTGGAGCTTTACATAGAAGTGATGTATCCATTGTATCATGGTTATGTTCTCAGGTTGATTTACATGGACTGTTGGCAATGGTTCCTCTTCCTTTAAGTCAAGGTGTACTGCTCTCACTTCTGCAGCAACTAGCCTGTGACATTAACAACGACACAACACGAAAGATCCAATGGTTAACAGATGTCGCGTCTGCCATAAACCCAGCGGACCCAGTGATTGCGATGCACACACGGCCCATCTTTGAGCAAGTCTACCAGATACTCAATCATCAACGTAGCTTGCCTTCAACGTCTCCAACTGATCTCTCAAGTATCCGTCTTTTATTGCATGTCGTCAACTCCATGCTCATGACATGTAAATGA 4032 0.4616 MMASPNNHHPNPNVHPPPPFDMHSFFNPPPPSSNPNPNPNPSPSSQYPPPFPAAAPFPFPAFDLPLHHHRSLSFPTQPIPPPSNPNAGARLMALLSNPSPPPPDFAAPSSSPSTVLAAATAAAAALTRLPSGKVPKGRHLSGERVSYDVDIRLPGEVQPQLEVAPITKYGSDPNPVLGRQIAVNKSYICYGLKQGNIRVLNIHTAVRSLLRGHTQDCLLEKIPPGNEIILDRVTDLAFFAEDVHLLASVGTDGRVYVWKISEGPDDEDKLQITANIVIAIQIVGEEKVEHPQICWHCHKQEILIVGMGKHVFRIDTTKVGNGEAVVAEDPPLRCPVDKLIDGVQLVGTHDGEVTDLSMCQWMTNRLVSASQDGTIKIWEDRKTQPLEVLRPHEGHPVFSATFFTAPHQPDHIVLITAGPQNREVKLWVSASEEGWLLPSDTESWKCTQTLELKSSAQPSRDAFFNQVAALPHAGLLLLANAQRNAIYAVHLEYGPNPESTRMDYIAEFTVTMPILSFTGTSDILPHGEHIVQVYCVQTQAIQQYALDLAQCLPPPLDNVGLEKSDSIVSADAITVEGFHTLDSSASKIMLQAGSTENGLVPRYPLSSGHVDVPITSSNTEAKPVTLTPSSSEPDVICIPSPPLPLSPRLSRKLSDIRNPQSNLGDHVGEHPVNDYSVDRQMDTIHRNLSETFNSDSKNDEKKVKQDHISSVLNPSVMFKQPTHLITPSEITKAGSSSENNIIDGKSEGEGKMQDVGNAEVEVKVVGETRSNQIDEFGRGSQQNPVSDSKEKIFCSQASDLGIEMAREGCVITAGDTYLTEESGQLDSTGAVSLAQPPDSGEDGLQDTAKDAHEKVSDSSTSVAVPPSPVSNAKGKRQKGKNSQASGLSFSSPSVCNSTDSSNEPNGISSLPSAENAFPQILAMQESLNQLLTMQKEMQKQMTMIVAVPVTKEGRRLEAALGRNMEKAVKANSDALWARIQEENAKNEKLLRDRIQQITGLISNFMNKDLPAILEKTVKKEMASVGQAVVRAMSPAVEKIISSAIVESFQRGVGDKTVNQLDKSVSSKLEATVARQIQAQFQTTGKQVLQEALKSSFETSAVPAFEMSCKAMFEQVDATFQKGMAEHSAAVQQRLESAPTSLAMTLRDSINSASSISQTLSREVLEGQRKLVALAATRTNSGTLNPLPVQLNNGPLLREKVEVPLDPTQELGRLISERKFEEAFIGALHRSDVSIVSWLCSQVDLHGLLAMVPLPLSQGVLLSLLQQLACDINNDTTRKIQWLTDVASAINPADPVIAMHTRPIFEQVYQILNHQRSLPSTSPTDLSSIRLLLHVVNSMLMTCK 1343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00533 1343 FunFam enhancer of mRNA-decapping protein 4 162 492 - -
Vian6g00533 1343 MobiDBLite consensus disorder prediction 1 52 - -
Vian6g00533 1343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 346 379 - -
Vian6g00533 1343 Gene3D - 1255 1342 IPR044938 -
Vian6g00533 1343 SUPERFAMILY WD40 repeat-like 175 491 IPR036322 GO:0005515
Vian6g00533 1343 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 163 491 IPR032401 -
Vian6g00533 1343 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 388 IPR001680 GO:0005515
Vian6g00533 1343 Gene3D - 166 532 IPR015943 GO:0005515
Vian6g00533 1343 MobiDBLite consensus disorder prediction 874 911 - -
Vian6g00533 1343 SMART WD40_4 342 379 IPR001680 GO:0005515
Vian6g00533 1343 SMART WD40_4 223 259 IPR001680 GO:0005515
Vian6g00533 1343 MobiDBLite consensus disorder prediction 71 111 - -
Vian6g00533 1343 FunFam Enhancer of mRNA-decapping protein 4 1255 1341 - -
Vian6g00533 1343 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 2 1341 IPR045152 GO:0031087
Vian6g00533 1343 MobiDBLite consensus disorder prediction 10 52 - -
Vian6g00533 1343 MobiDBLite consensus disorder prediction 828 911 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00533 Vian-Chr6 20651849 20660409 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00533 K12616 - gmx:100798228 2069.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00533 6 20651849 20660409 Vian6g00533 6 20651849 20660409 ECH