Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00496 ATGAAGCCACACAAACTTCCCTCTCCGTCACTCTCACGTGTGCTTGCACGTGCCCTATCCCCCGCCACCCCCGCCACCTCCGCCACCCCCGCCACCCCCACCATCCCTACGCAATGCGATTTGGCATTTCCTTTGAAGACGGTGACCACTGCAAACTTCGAACCGTCGCTGGCGGAGCTCCGTCGCCACGTCCGGACGTCGGACTTCGTGGCCATCGACCTCGAGATGAGCGGCATCACCAGCGCTCCCTGGCGCGAGTCCTTCGAGTTTGACCGCTCCGACGTGCGCTACCTCAAAGTCCGAGACTCCGCCACCAAGTTCGCCGTCCTTCAATTCGGCGTTTGCCCCTTCCGTTGGGATTCCTCTAATCACTCCTTCGTCGCGTATCCGCACAGTTTCTATGTTTTTCCTCGACAGGAGCATGCAGGTCTGGGTCCGTGCGATGAATTTCTCTGGCAGACTACTTCGATGGATTTCTTGGCTAAATACCAGTTTGATTTTAATGCTTGCATACACGAAGGAATATCTTATTTATCCAGAGAACAAGAAAGGGAAGCCTTAAGGAATTTGAATTCTGCACTTGATAGTGAGTGGTCAGACATTTGTAAATTAAAAGATGTCAGGGACATGCCGTTGCACAGTGCATCAGACATTTTGTTCACTGCACGAATGAAAAACAAATTCCGCCGATGGCACGATGGGTTATTACATGAGCAAAATCTAGAAGACCAAATTCAAGGAATTACAGAAGACTCAAAATTTCAAGAGATATTTTTTGAGATGCATCCAGCTCTTAGGCTTAATGGATTCACCTCTCACCAGCTTAAATTGATTCATTTGGTCATCAGAAAACACTTCAAAGATCTTTCTTATATCAGTGTGAACAGTGAGGCTTCCGGTTTACAGCATTTAGTTGTGTATACAGACTCAAAGGATGAATTGAATTTACTTCTGAAAAAAGTGAAAGAAGAAAATCATGGGGCAGAAAATATGAAAATTCAAGCTGCTGTGGGACTTCGCCATGTTATTGATCTCCTTTCATCGGAACAGAAGTTGATTGTTGGTCACAATTGTTTTCTAGATATTGCTCATGTCTACAGCAAATTTATAGGCCCTCTTCCTGGTACTCCTGAAGAGTTTGTTACCTCAGTTAACAAGTGCTTTCCACACATTGTTGACACCAAGATACTTCTGAACACTAATTTTATGCTCCAAGAAAAGATGAAAAGATCCAGAAAATCACTGGCAGCTGCATTCACTTCATTTTGCCCTCAAATTGCTGCTGGTTCAGGAACCAGTTATCTAGGTTCACTCCCACATGTGAAAGTGGACGTTGAAGTCGATGAAGTGAGATCATCCAGCTGGAACCCTGGAGGCAAGCATGAGGCAGGATATGATGCCTTCATGACTGGATGCATCTTTGCCCAGTTATGCAGTGATTTAGGTATTGATTACAAACTCCATGATTCTTCAAAACAATTAGCCCTTGACGAGAAACTGCAGAATTATATTAATCGTCTATATCTTAGTTGGATGCATGGGGACATTATTGATCTAACTACTGGTAATAAGGTTGCCGATTCTTCACCCAGTCATAGCCTCAGGAAGCGGTACCCAAAAATTTTGTTTGAGAACATTGTCATTATTTGGGGATTTCCTTCTACGCTGAAGGCAAATGAAATAAGAATGTGCATATCTAAAGTATTTGGTCCAACTTCTATAGTTTCTCTCTTCCACCTGGATGCAACTGCAGTATTCGTTCAGTTTAGTGTAATACAACTAGTTTCTGATTTTCTTTCATTGAAGAACACCTTAGAGAGAAGTGATGGTGCACTATTGGTTTTGCATCCACTGTCAAAACTTTTGGAAGGTGGAAATACATGTGCTGCTAATTATGGTACTTATAAAGAAATTTGTGGCTCACCTTTATCAGAATGCCTGTTTGCTGATCAGGCAAAGGCAGTTGGTATAAAGTGGAAGACCAAGTTGCCAGAATACAAGGTAGTATTGGGGGCCGAAGAACATGAAAATTCAAGTGTAAGAGGTAATGTAAATATTGCTATGGAGAATGTGGAAAGGACCAAGCCAAACAAAATTGATCAATTGCGAAATGCTCCATCTCGGAGACAAGTCTCCCCATATGGGGATGAAGATTCTTGTGTTGCAGAAGGCAACTTGTGA 2181 0.4347 MKPHKLPSPSLSRVLARALSPATPATSATPATPTIPTQCDLAFPLKTVTTANFEPSLAELRRHVRTSDFVAIDLEMSGITSAPWRESFEFDRSDVRYLKVRDSATKFAVLQFGVCPFRWDSSNHSFVAYPHSFYVFPRQEHAGLGPCDEFLWQTTSMDFLAKYQFDFNACIHEGISYLSREQEREALRNLNSALDSEWSDICKLKDVRDMPLHSASDILFTARMKNKFRRWHDGLLHEQNLEDQIQGITEDSKFQEIFFEMHPALRLNGFTSHQLKLIHLVIRKHFKDLSYISVNSEASGLQHLVVYTDSKDELNLLLKKVKEENHGAENMKIQAAVGLRHVIDLLSSEQKLIVGHNCFLDIAHVYSKFIGPLPGTPEEFVTSVNKCFPHIVDTKILLNTNFMLQEKMKRSRKSLAAAFTSFCPQIAAGSGTSYLGSLPHVKVDVEVDEVRSSSWNPGGKHEAGYDAFMTGCIFAQLCSDLGIDYKLHDSSKQLALDEKLQNYINRLYLSWMHGDIIDLTTGNKVADSSPSHSLRKRYPKILFENIVIIWGFPSTLKANEIRMCISKVFGPTSIVSLFHLDATAVFVQFSVIQLVSDFLSLKNTLERSDGALLVLHPLSKLLEGGNTCAANYGTYKEICGSPLSECLFADQAKAVGIKWKTKLPEYKVVLGAEEHENSSVRGNVNIAMENVERTKPNKIDQLRNAPSRRQVSPYGDEDSCVAEGNL 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00496 726 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 48 637 - -
Vian6g00496 726 MobiDBLite consensus disorder prediction 704 726 - -
Vian6g00496 726 Pfam CAF1 family ribonuclease 48 474 IPR006941 -
Vian6g00496 726 Gene3D - 305 523 IPR036397 GO:0003676
Vian6g00496 726 Gene3D - 47 207 IPR036397 GO:0003676
Vian6g00496 726 SUPERFAMILY Ribonuclease H-like 46 486 IPR012337 -
Vian6g00496 726 Coils Coil 311 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00496 Vian-Chr6 19997137 20001116 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00496 K01148 - gmx:100808217 1145.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00496 6 19997137 20001116 Vian6g00496 6 19997137 20001116 ECH