Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00490 ATGCACCATCACCTCCGTCCGGCCATGCTGCCGGTTCTCGCGGCGGCGTTCCTCCTCCTCGCCACCCTTTCCCAAGCGCACAACATCACGCGCATTCTCGCCCAGCACCCGGAGTTCTCCACCTTCAACCACTACCTCACCCTCACGCACCTCGCCCCCGAAATCAACGGAAGAACCACCATCACCGTCTGCGCCGTCGACAACTCCGCCATGGACGACCTCCTCTCCAAGCACCCCTCCATCTACACCGTCAAAAACATCCTCTCCCTCCACGTCCTCCTCGACTACTTCGGCGCCAAGAAGCTCCACCAGATCACGAACGGCACAGCGCTAGCTGCCACAATGTACCAGGCCACCGGCACCGCCCCGGGCTCAGCCGGCTTCGTCAACATCACCGACCTCCACGGCGGTAAGGTCGCATTCGGCGCCGAAAACAACGACGGAACCCTGACCTCCACCTTCGTGAAATCCGTGGAAGAAATCCCTTACAACATCTCCGTTATCCAGATCAGCAAAATTCTACCCTCGGCTGCAGCGGAAGCCCCTGCACCTGCGCCGGCGCAGCAAAACCTCACCAGCATTATGTCCAAACACGGTTGCAAAGTCTTTGCCGACACTCTTTCTAACTTTAGCGACGCACTTTCCACCTTCAACGACAACCTCGACGGTGGATTAACTGTTTTCTGCCCCCTCGACGACGCCTTCAAAGCGTTCCTCCCCAAATTCAAAAACCTAACCGCTTCTGGCAAACTCGCGCTTCTCGAATTCCATGGCGTGCCGGTGTACCAATCCCTTGCTACGCTGAAATCGAACAATGGACTTCAGAACACCTTGGCCACCGACGGAGCTAACAAATTCGATTTCACAGTACAAAACGACGGCGAAGATGTCACTCTCAAGACGAGGCTCACCACGGCGAAGATCACCGACACCATAATCGATGAACAGCCTCTCGCGGTTTTCGCCATCAGTAAGGTGCTTCTCCCTAAGGAGTTATTCAAGGGTGAGGCGCTTGCTCCGGCGCCTGCGCCGGAGCCTTCTGCTGCCGACGCTCCTGCGCCAGCGAAGAAGGGGAAGAAGAAGAAGAAGGCTGCTGATGCACCTGCTGCGGATGCGAATTCCGACGCGCCGGCGGATTCACCCGGGGACGCCGCCGATGACACCGCTGACGACAGTAACGGCGCCGTTAGCGGCGGGAGTTATGGTAATGTTGTTGTTGCCTTGGGTTTGGTTTTGGGGTTATCGTTAGTGCTGTGA 1257 0.5752 MHHHLRPAMLPVLAAAFLLLATLSQAHNITRILAQHPEFSTFNHYLTLTHLAPEINGRTTITVCAVDNSAMDDLLSKHPSIYTVKNILSLHVLLDYFGAKKLHQITNGTALAATMYQATGTAPGSAGFVNITDLHGGKVAFGAENNDGTLTSTFVKSVEEIPYNISVIQISKILPSAAAEAPAPAPAQQNLTSIMSKHGCKVFADTLSNFSDALSTFNDNLDGGLTVFCPLDDAFKAFLPKFKNLTASGKLALLEFHGVPVYQSLATLKSNNGLQNTLATDGANKFDFTVQNDGEDVTLKTRLTTAKITDTIIDEQPLAVFAISKVLLPKELFKGEALAPAPAPEPSAADAPAPAKKGKKKKKAADAPAADANSDAPADSPGDAADDTADDSNGAVSGGSYGNVVVALGLVLGLSLVL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00490 418 Gene3D FAS1 domain 24 171 IPR036378 -
Vian6g00490 418 MobiDBLite consensus disorder prediction 339 396 - -
Vian6g00490 418 ProSiteProfiles FAS1/BIgH3 domain profile. 187 327 IPR000782 -
Vian6g00490 418 SMART fasc_3 226 330 IPR000782 -
Vian6g00490 418 SMART fasc_3 62 177 IPR000782 -
Vian6g00490 418 SUPERFAMILY FAS1 domain 32 174 IPR036378 -
Vian6g00490 418 Gene3D FAS1 domain 172 330 IPR036378 -
Vian6g00490 418 FunFam Fasciclin-like arabinogalactan protein 10 180 330 - -
Vian6g00490 418 SUPERFAMILY FAS1 domain 183 330 IPR036378 -
Vian6g00490 418 ProSiteProfiles FAS1/BIgH3 domain profile. 26 174 IPR000782 -
Vian6g00490 418 Pfam Fasciclin domain 37 114 IPR000782 -
Vian6g00490 418 Pfam Fasciclin domain 207 329 IPR000782 -
Vian6g00490 418 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 11 403 IPR033254 -
Vian6g00490 418 FunFam Fasciclin-like arabinogalactan protein 2 25 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00490 Vian-Chr6 19854000 19855256 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00490 - - gmx:100810878 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00490 6 19854000 19855256 Vian6g00490 6 19854000 19855256 ECH