Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00486 ATGGATGAGGGCGAGGGAGGGTACGGTGAGAGCGGCGATCCCATGGATCAGTTTCACCGTAACGAAGCTATATCCGCCGTCGCCGACGATGGTTTCATGGCAGAGGAAGATGATGATTATGAAGATCTTTACAACGATGTCAACATTGGAGAGGGTGTCCTTCAATCTTTGCGCAAAAACGAGGATTCGGGGTTCCGAAACGATGATGTTGAGGTCAAGAAGCCCCCGCCGCCCCCTCAAGTTCCTGATGCTCCCGGGGTTTCGATTTCGGGTGCCGGTGACGGTGACGGGGGAGAAGGTGTCGGAGGTGGCGGAAGTGGGATTGTCGAGTCTAGGGTTTCGGGGAGAGTTGATGGATTTCAGAATCAAGGGTTTAGAGGGAACGAGGTGGGTGCCAAAGGTGGGATCAGGGTTGAATTGGGGCACCAAACTGTAAAATCTGATATTGAGGAACAGGGTGGTAATGACGGGGCTGCACTTCCGGGGATTGAGCAGCAGTCACATGGCGGGGTTGTTGGGAGTGTGGGAAATGAGGGTTTAGTGAGACAAGGTCAAGGTGGGGGAGGAGGGGGAAGTGCTAATAGGGTTGGTGGAAATGGTGTTGGGAACAGTGTGACCGCTGTTAATAGTGTTAGTACCGGAGGAGTTGGAGGTGTTGGCGGTGGTAGTGGTGCTTCCGGTGGTACTATATTGTTTGTTGGTGATTTGCATTGGTGGACTACTGATGCTGAGCTGGAAACTGAGCTTAGTAAGTATGGGCCTGTCAAGGAGGTGAAGTTTTTCGATGAGAAGGCTAGCGGGAAGTCAAAGGGCTATTGCCAAGTTGAGTTTTTTGACCCTTCTGCTTCCACAAATTGCAAGGAGGGAATGAATGGTCATGTTTTTAATGGGAGACCATGTGTTGTTGCTTTTGCATCACCTTTTACAGTTAAGAAAATGGGGGAGGCTCAGATAAACAGGAATCAGCAGATGAACCCATCTACAGTTACACAACAGGGAAGGAGGGGGCCTTCTGATTCAGGGGCTAAGCCTGGTGGGGGTAATATTTCTACAGGTGGTAATTACCAAGGGGGAGACGGGAATAGAGGTTATGGGAGAGGAGGTAACTGGGGAAGAGGGAACAATCCTGGTATGGGGAATAGGGGACCCGTGAATCAAATGAGGAATAGGGGTGGTGGGATGGGTGGTAGAGGTATAATGGGTCATGGTGGAAATGGTTTTGGACAGGGTATTGGTGGTACCCCTCCACTGTTGCATCCTCAGTCAATGATGGGTCAGGGTTTTGATCCTGCTTTTGGTGGTCCCATGGGTAGAATGGGTAGCTATGGAGGCTTTCCTGGTGCTCCAACGCCTCCATTTTCTGGGATCTTACCATCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTGGCACCTCATGTTAATCCTGCATTCTTTGGAAGGGGGATGCCAGTTAACGGTATGGGGATGATGCCTACATCAGGCATGGATGGTCCTAATATGGGGATGTGGTCAGATCCAAATATGGGTGGATGGGGTGGGGAAGAGCCTGGTGGTGGGAAGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCTGACCATCAGTATGGTGAAGTGAGTCATGATAGAGCTGGGTGGCCTATGAGGGAGAAAGATAGAGGTTCAGAAAGAGACTGGTCTGGTTCTTCTGAGAGAAGGTATAGGGATGATAGAGATCAAGGATATGAGAGAGATGCACCTAGAGAGAAAGATATGGGCCATGATCCTGAGTGGTCTGAAAGAAGACATCGCGATGATAGAGAAACTGGCAGAGAACGGTCCCGTGATCGTGACAGGGAAAGGTCTCGTGACCGTGATCGTGAACGTTCTCGAGATCGTGACCGCGACCGGGAAAGGGATCACCGTGAGCGTGACAGACACAGAGAAGATAGGGACAGGTATGCAGATCATCATAGGTACAGAGATGGGGAAGGAGAGCATGATGACGAGTGGGAAAGGGGACGGTCATCAAGGACACACAGCAAATCACGGTTATCACAAGAGGAGGAACACCACTCTAGGCCGAGAGATGCTGATTATGGGAAGAGGAGACGGCTTACTTCTGAATAA 2115 0.5083 MDEGEGGYGESGDPMDQFHRNEAISAVADDGFMAEEDDDYEDLYNDVNIGEGVLQSLRKNEDSGFRNDDVEVKKPPPPPQVPDAPGVSISGAGDGDGGEGVGGGGSGIVESRVSGRVDGFQNQGFRGNEVGAKGGIRVELGHQTVKSDIEEQGGNDGAALPGIEQQSHGGVVGSVGNEGLVRQGQGGGGGGSANRVGGNGVGNSVTAVNSVSTGGVGGVGGGSGASGGTILFVGDLHWWTTDAELETELSKYGPVKEVKFFDEKASGKSKGYCQVEFFDPSASTNCKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQINRNQQMNPSTVTQQGRRGPSDSGAKPGGGNISTGGNYQGGDGNRGYGRGGNWGRGNNPGMGNRGPVNQMRNRGGGMGGRGIMGHGGNGFGQGIGGTPPLLHPQSMMGQGFDPAFGGPMGRMGSYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPMREKDRGSERDWSGSSERRYRDDRDQGYERDAPREKDMGHDPEWSERRHRDDRETGRERSRDRDRERSRDRDRERSRDRDRDRERDHRERDRHREDRDRYADHHRYRDGEGEHDDEWERGRSSRTHSKSRLSQEEEHHSRPRDADYGKRRRLTSE 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00486 704 SUPERFAMILY RNA-binding domain, RBD 227 315 IPR035979 GO:0003676
Vian6g00486 704 SMART rrm1_1 230 303 IPR000504 GO:0003723
Vian6g00486 704 MobiDBLite consensus disorder prediction 318 422 - -
Vian6g00486 704 Gene3D - 224 369 IPR012677 -
Vian6g00486 704 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 20 640 IPR034772 -
Vian6g00486 704 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 300 IPR000504 GO:0003723
Vian6g00486 704 CDD RRM_CFIm68_CFIm59 231 304 - -
Vian6g00486 704 MobiDBLite consensus disorder prediction 1 26 - -
Vian6g00486 704 MobiDBLite consensus disorder prediction 498 704 - -
Vian6g00486 704 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 307 IPR000504 GO:0003723
Vian6g00486 704 MobiDBLite consensus disorder prediction 318 337 - -
Vian6g00486 704 MobiDBLite consensus disorder prediction 55 110 - -
Vian6g00486 704 MobiDBLite consensus disorder prediction 536 704 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00486 K14398 - gmx:100782869 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00486 6 19793711 19802289 Vian6g00486 6 19793711 19802289 ECH