Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00425 ATGGTGACAGAGGAACAAATATCGGAAGCGGTATCGTCGCTGCTGCGCGAATCGAACCCTAGCAAGCGTAGTTTCACGACGCTGAACCAGGTGGTGGAGGAGCTTCAGGCTAAGCTCGGCCACGACCTCTCTCATAAGCTCGATTTCATCACTGCGCAGATCAACCTCCTTTTCGGATCCCAACCACAACCACCACAACCTCCGCCGCAAAATGCGCAGAGGCAGATACAGCAACAGAAAGACCGTTTCGTCCCTCCACCAAACCCTAATTTCCACTCTGTTCCTGTCAGTTCCGACTTCCAGGCTACCAAATTCATTTCTTCTAACGCTGTCGTCGCCACTCCTGCTGATATTTCGCGCGTTGAAGTTCCTTCTCCTGTTCCTGCCTCTGCCCCTGCTCTTGCTCCTGTTAACGATGCTCCGAAGGAAAGTACTCAAACAAAGGTGAAGAGAAGAGGTGGCCCTGGAGGTCTCACCAAACTTTGTGGTGTATCGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCACTGTCGAGGACTGAGATTGTCAAGCAACTGTGGGCTTACATAAGGAAAAACAATCTTCAAGATCCCAGCAACAAAAGGAAAATAATTTGCAATGAAGAGCTGCGTGTGGTGTTTGAGACTGATTGTACTGATATGTTTAAGATGAACAAGTTGCTAGCTAAACACATTATCCCCCTTGAACCAACCAAAAAGCCTGTTCCAAAGAAGCAGAAGGTAGATGTGGACTCAGGAAAAAGAATTACTGAACCTACTCCCTCTGTAATAATATCTGATGCACTGGCTAACTTTTTTGGGATTACTGAAAGGGAGATGCTACAGTCTGAAGTTCTGAGACGTATCTGGGAGTACATAAAAGTCAACAGGCTAGAGGATCCTATGAATCCTATGGCAATACTGTGTGATGCGAAGCTTCAGGAGATCTTTGGCTGTGAAAGCATTTCAGCATTGGGGATACCTGAAGTTCTGGGCCGTCATCATATTTTTAGGAGTTCATGA 1023 0.4712 MVTEEQISEAVSSLLRESNPSKRSFTTLNQVVEELQAKLGHDLSHKLDFITAQINLLFGSQPQPPQPPPQNAQRQIQQQKDRFVPPPNPNFHSVPVSSDFQATKFISSNAVVATPADISRVEVPSPVPASAPALAPVNDAPKESTQTKVKRRGGPGGLTKLCGVSPELQVIVGQPALSRTEIVKQLWAYIRKNNLQDPSNKRKIICNEELRVVFETDCTDMFKMNKLLAKHIIPLEPTKKPVPKKQKVDVDSGKRITEPTPSVIISDALANFFGITEREMLQSEVLRRIWEYIKVNRLEDPMNPMAILCDAKLQEIFGCESISALGIPEVLGRHHIFRSS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00425 340 CDD SWIB-MDM2_like 263 334 - -
Vian6g00425 340 ProSiteProfiles SWIB/MDM2 domain profile. 157 234 IPR003121 -
Vian6g00425 340 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 243 334 - -
Vian6g00425 340 Pfam DEK C terminal domain 2 58 IPR014876 -
Vian6g00425 340 CDD SWIB-MDM2_like 162 232 - -
Vian6g00425 340 ProSiteProfiles SWIB/MDM2 domain profile. 258 337 IPR003121 -
Vian6g00425 340 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 59 IPR014876 -
Vian6g00425 340 Gene3D - 1 58 - -
Vian6g00425 340 SUPERFAMILY SWIB/MDM2 domain 151 237 IPR036885 -
Vian6g00425 340 SMART swib_2 259 340 IPR019835 -
Vian6g00425 340 SMART swib_2 158 237 IPR019835 -
Vian6g00425 340 MobiDBLite consensus disorder prediction 58 90 - -
Vian6g00425 340 Gene3D SWIB/MDM2 domain 256 340 IPR036885 -
Vian6g00425 340 Gene3D SWIB/MDM2 domain 153 241 IPR036885 -
Vian6g00425 340 MobiDBLite consensus disorder prediction 130 158 - -
Vian6g00425 340 Pfam SWIB/MDM2 domain 162 232 IPR003121 -
Vian6g00425 340 Pfam SWIB/MDM2 domain 264 334 IPR003121 -
Vian6g00425 340 SUPERFAMILY SWIB/MDM2 domain 255 335 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00425 Vian-Chr6 18097183 18100338 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vian6g00425 SWIB 8.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00425 - - gmx:100801960 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00425 6 18097183 18100338 Vian6g00425 6 18097183 18100338 ECH