Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00409 ATGCTCCCTCAGCGCATGAAGAAAGCCATCACTGACAACCCTAAGAAGCTTGCCAACTTGATTGACCTCGTCAACCTTCCATCCACGCTCAGAGAATTCGTGGGCCAGTCTCAGATTTCCCGTTTGGGTTGTTTCATGTCGGTTTGGTCCTACATCAAAGCCAATAATCTGCAGGACCCAAACAACAAGAATGTGATCAACTGTGATGATAAGCTAAAGAGTATTTTGTTGGGGAAACCTCAGGTTGAGTTAGCAGAACTTCCTGCACTTATCAAGATGCACTTTCCAAAAGAGCCCAAATGA 303 0.4521 MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFMSVWSYIKANNLQDPNNKNVINCDDKLKSILLGKPQVELAELPALIKMHFPKEPK 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00409 100 CDD SWIB-MDM2_like 24 95 - -
Vian6g00409 100 SUPERFAMILY SWIB/MDM2 domain 16 97 IPR036885 -
Vian6g00409 100 SMART swib_2 20 100 IPR019835 -
Vian6g00409 100 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 12 100 - -
Vian6g00409 100 Gene3D SWIB/MDM2 domain 16 100 IPR036885 -
Vian6g00409 100 Pfam SWIB/MDM2 domain 24 95 IPR003121 -
Vian6g00409 100 ProSiteProfiles SWIB/MDM2 domain profile. 19 97 IPR003121 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vian6g00409 SWIB 2.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00409 - - gmx:100527179 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00409 6 17585247 17586563 Vian6g00409 6 17585247 17586563 ECH