Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00131 ATGGCTTCTATCTCATGCATCACCCACCACCCCGCCACTTCCAAGCTAAAAACTTTCTCCCCTTCACCTCACGCTTATGCCTCAAACTTGGCTTCCAGGTTTCTGGGCACAAAAAAAAGTGTTGGGTGGCTCAGCCTCACCTCTAGTATTGGCCCCTCCAACGGCTCCAGAGCCACGTGCTGGTTCAGGTTCGGGAAGAACGGTGTTGATGCCGAAGGTGCTGGCATTTATGGCAGCCAGAGCCGTGATGACTTCGATAGAGATGATGTGGAGCAGGCCATGGACCTTCTTGATCGCCCATTGACCCTGTCCAGATTGACTTTCCATGGTAATTTTGGAAATTCAGTTTTGGAAGAGAAATACTTCAACTACATGGGGATGCTAGCAGTAGATGGAACCTATGATAAAATGGAAGCCCTTCTAAGCCTAAACATCCACCCTGTGGACATCCTTCTCCTATTAGCTGCATCAGAAGGTGACAAGCCAAAAATTGAAGAACTCCTGAGAGCTGGAGCAAAATATGATGTAAAAGATAGAGAGGGTAGGACCGCATTGGACCGAGCCAACGAAGAAATTAAAGAATTCATTCTTAATTTTTCAGTGCAAAGGGCATGA 615 0.4715 MASISCITHHPATSKLKTFSPSPHAYASNLASRFLGTKKSVGWLSLTSSIGPSNGSRATCWFRFGKNGVDAEGAGIYGSQSRDDFDRDDVEQAMDLLDRPLTLSRLTFHGNFGNSVLEEKYFNYMGMLAVDGTYDKMEALLSLNIHPVDILLLLAASEGDKPKIEELLRAGAKYDVKDREGRTALDRANEEIKEFILNFSVQRA 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00131 204 PANTHER PROTEIN LHCP TRANSLOCATION DEFECT 1 204 IPR044242 GO:0006886|GO:0009570|GO:0090391
Vian6g00131 204 Gene3D - 148 203 IPR036770 -
Vian6g00131 204 SUPERFAMILY Ankyrin repeat 127 198 IPR036770 -
Vian6g00131 204 FunFam Protein LHCP TRANSLOCATION DEFECT 113 203 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00131 - - gmx:100499940 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00131 6 3514280 3517715 Vian6g00131 6 3514280 3517715 ECH