Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00117 ATGAGAAGAAGGCCAGGAATTGGAGGTTTGCAGACGCACGCTGCTGCGAGGGATCAATTCCGTTTGCTGGGTGAAAATGTCGCAAAGATCAGAACGGATTTGATGAAGGAGCAGCTTGCCACCTTTCGCTCTCAGCTCGAAGATTTCGCTCGCAAACACAAGAATGACATACGCAAGAACCCTGCATTCAGATCACAGTTTCATGAGATGTGCGCTAAAGTTGGTGTGGATCCCTTGGCCTCAAACAAGGGTTTCTGGGCAGAGCTGTTAGGAATTGGTGACTTCTATTATGAACTGGGAGTTCAAATAGTGGATATTTGCTTGGCTACTAGAGCACACAATGGAGGACTGATCAACCTGCAGGAACTCTGCCATCTCCTTCGCCAGAGACGAAAAAGTGATCGAGGAGTTGTTTCAGAGGATGATTGCCTACGAGCTATTAGTAAGCTGAAGGTGTTGGGTAGTGGTTTTGAAGTAATTTCTGTTGGAAAGAGAAAACTTGTTCGTTCAGTTCCAACTGAATTGAACAAAGACCACAACGAAATTCTCGAACTTGCCCAGGCTCAAGGATTTGTGACAGTCGATGAAGTAGAGAGACGGTTATCTTGGAGTTCTGGCCGAGCCATTGATGCCCTCGATACATTACTTGATGAAGGACTTGCCATGATTGATGACGGCCATAGAGATGGTAGACGGAGGTACTGGTTTCCTTGTGTGTCTCCTATCTCATCTTCAACAGCAGTTGATACCTAA 753 0.4608 MRRRPGIGGLQTHAAARDQFRLLGENVAKIRTDLMKEQLATFRSQLEDFARKHKNDIRKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRAHNGGLINLQELCHLLRQRRKSDRGVVSEDDCLRAISKLKVLGSGFEVISVGKRKLVRSVPTELNKDHNEILELAQAQGFVTVDEVERRLSWSSGRAIDALDTLLDEGLAMIDDGHRDGRRRYWFPCVSPISSSTAVDT 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00117 250 PIRSF ESCRT2_Vps22 1 246 IPR016689 GO:0000814|GO:0071985
Vian6g00117 250 SUPERFAMILY "Winged helix" DNA-binding domain 24 174 IPR036390 -
Vian6g00117 250 Gene3D - 24 85 - -
Vian6g00117 250 PANTHER EAP30 SUBUNIT OF ELL COMPLEX 1 240 IPR016689 GO:0000814|GO:0071985
Vian6g00117 250 FunFam Vacuolar-sorting protein SNF8 91 171 - -
Vian6g00117 250 SUPERFAMILY "Winged helix" DNA-binding domain 175 238 IPR036390 -
Vian6g00117 250 Gene3D - 91 171 IPR036388 -
Vian6g00117 250 Gene3D - 172 250 IPR036388 -
Vian6g00117 250 Pfam EAP30/Vps36 family 6 225 IPR040608 -
Vian6g00117 250 FunFam Vacuolar protein sorting-associated protein 172 250 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00117 K12188 - gmx:100781799 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00117 6 3212945 3216907 Vian6g00117 6 3212945 3216907 ECH