Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01887 ATGGCCCAAGAAACCCAAAACCCACCTCCCCCTCAGGAAGTGCCGCCAGTTGTCGACCCTGTCCCTCTCGACAACGCACCTACCACCGAAGCTCAACCCGAACCTGAACCTGAACCTGAACCTCAACCTGAAACTGAAACCCAGGAGAAGGTCCAGGCCGCTGTTGAAGACAAGATTTCTGAATCGGTTTCGTTCAAGGAGGAGACCAACGTCGTCGGCGACCTCCCCGAGGCGCAGAAGAAAGCCCTTGATGAACTCAAGAAGCTTGTTCAAGAAGCGCTCAACAAGCGTGAGCTAACCGCGCCCAAGCCCCCCACGCCAGAGCCAGAGAAGAAGAAACCAGACACCGTCAAGGAGCCTGAAGTGGCAGCGGGAGAAGCAGAGAAGAAGGAGCCGGAAGGGGCCGCAGAAGAAGCGGAGAAGAAGGAAGTTGAATTGACCGAAGAGAAGAAGGAAATTGAAGTTAAAGAAGAGACGAAGGAAGTAGAAGTGACAGAAGAGAAGAAGAAGGAGGTTGAAGTGACAGAAGAAAAGAAGGATGTTGAAGTTAAAGAAGAGAAGAAGGAAATAGAAGTGACGGAAGAGAAGAAGGAAGTACACGTGACAGAAGAGAAGAAAGATGTAGAAGTGACAGAAGAGAAGAAGGAAGTAGAAGTGACGGAAGAGAAGAAGGAAGTAGAAGTAACTGAAGAGAAGAAGGAAGAAGGGGTGACAGAAGAGAAGGAGGTGGTTGAAGCGACAGAAGCGAAGGAGGTGGAAGAGGAACTTGGTCCGGAGGAAGTTGAGATATGGGGAATTCCGCTGCTGGCGGATGAGAGGAGCGATGTGATTCTGCTAAAGTTTCTGAGAGCGAGGGATTTCAAGGTAAAGGATGCCTTCACCATGCTCAAGAACACCGTGCGTTGGAGGAAGGAATTCGGAATCGACGCTCTGGTCCTGGAAGATTTCGGAACTGATTGGGACAAGGTGGTGTTCACCGAGGGACACGACAAACAAGGCCACCCCGTGAATTACAACGTCTTTGGTGAGTTCGAGAATAAGGAGTTGTACAACAAGACCTTTTCGGACGAGGAGAAGCGCAACAAGTTCATCAGGTGGAGGATTCAGGTGCTGGAGAAGAGCGTGAGAAGCCTTGACTTCTCTCCCACTGCCATCTCCACCATTGTGCAGGTCAACGACCTCAAGAACTCTCCGGGACTCGGCAAGAGTAACCTCAGGCAGGCCACCAATCAGGCCCTTCAATTGCTTCAGGATAACTACCCTGAATTTGTGGCCAAGCAGATATTTATCAATGTTCCCTGGTGGTACCTTGCCTTTTCTAGGATGATCAGTCCGTTCTTCACACAGAGGACCAAGAGCAAATTTGTGTTTGCTGGGCCATCCAAGTCTGCCGAAACCCTTTTCAAATATATTGCTCCGGAGCTGGTGCCCATTCAATACGGTGGACTGAGCAGAGAGGGTGAACAGGAATTCACCACTTCTGATCCTGTTACGGAGGTCACAATCAAACCCGCAACCAAACATGCTGTCGAGTTCCCAGTTTCTGAGAAAAGCCACCTGGTTTGGGAAATCCGAGTGGTGGGTTGGGATGTGAGCTACGGAGCTGAATTTGTGCCCGGAGCTGAGGATGGATACACTGTCATTGTGCAGAAGAACAGGAAAATTGCCCCCGTAGATGAGACCGTGATCAGTCACGGTTTCAAAATTGGTGAAGCTGGCAAGGTAGTACTCACCATAGACAACCAAACATCCAAGAAGAAGAAACTCCTCTACAGGTCAAAGACCAAACCCATCGCAGAGTGA 1803 0.5008 MAQETQNPPPPQEVPPVVDPVPLDNAPTTEAQPEPEPEPEPQPETETQEKVQAAVEDKISESVSFKEETNVVGDLPEAQKKALDELKKLVQEALNKRELTAPKPPTPEPEKKKPDTVKEPEVAAGEAEKKEPEGAAEEAEKKEVELTEEKKEIEVKEETKEVEVTEEKKKEVEVTEEKKDVEVKEEKKEIEVTEEKKEVHVTEEKKDVEVTEEKKEVEVTEEKKEVEVTEEKKEEGVTEEKEVVEATEAKEVEEELGPEEVEIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTVRWRKEFGIDALVLEDFGTDWDKVVFTEGHDKQGHPVNYNVFGEFENKELYNKTFSDEEKRNKFIRWRIQVLEKSVRSLDFSPTAISTIVQVNDLKNSPGLGKSNLRQATNQALQLLQDNYPEFVAKQIFINVPWWYLAFSRMISPFFTQRTKSKFVFAGPSKSAETLFKYIAPELVPIQYGGLSREGEQEFTTSDPVTEVTIKPATKHAVEFPVSEKSHLVWEIRVVGWDVSYGAEFVPGAEDGYTVIVQKNRKIAPVDETVISHGFKIGEAGKVVLTIDNQTSKKKKLLYRSKTKPIAE 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01887 600 MobiDBLite consensus disorder prediction 103 199 - -
Vian5g01887 600 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 497 592 IPR036598 -
Vian5g01887 600 SUPERFAMILY CRAL/TRIO N-terminal domain 64 314 IPR036273 -
Vian5g01887 600 Gene3D - 223 512 IPR036865 -
Vian5g01887 600 MobiDBLite consensus disorder prediction 226 255 - -
Vian5g01887 600 PANTHER PATELLIN-1 30 597 IPR044834 GO:0008289
Vian5g01887 600 MobiDBLite consensus disorder prediction 50 64 - -
Vian5g01887 600 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 313 488 IPR001251 -
Vian5g01887 600 MobiDBLite consensus disorder prediction 94 199 - -
Vian5g01887 600 Coils Coil 136 203 - -
Vian5g01887 600 PRINTS Cellular retinaldehyde-binding protein signature 277 299 - -
Vian5g01887 600 PRINTS Cellular retinaldehyde-binding protein signature 474 483 - -
Vian5g01887 600 SMART sec14_4 317 485 IPR001251 -
Vian5g01887 600 Coils Coil 212 232 - -
Vian5g01887 600 MobiDBLite consensus disorder prediction 226 251 - -
Vian5g01887 600 CDD SEC14 319 483 IPR001251 -
Vian5g01887 600 ProSiteProfiles GOLD domain profile. 464 595 IPR009038 -
Vian5g01887 600 MobiDBLite consensus disorder prediction 1 77 - -
Vian5g01887 600 Pfam CRAL/TRIO domain 322 482 IPR001251 -
Vian5g01887 600 MobiDBLite consensus disorder prediction 8 22 - -
Vian5g01887 600 SMART CRAL_TRIO_N_2 274 299 IPR011074 -
Vian5g01887 600 SUPERFAMILY CRAL/TRIO domain 324 484 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01887 Vian-Chr5 40891453 40893517 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01887 278 477 Acyl Lipid Metabolism Gene Families AT1G55840 28.111 2.72e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01887 K19996 - gmx:100806382 621.698