Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01886 ATGGCCGAAAATGATTCTAACCCTCCTCCTCCTCCTCCTCCAGCCGCTTCACCGCCTCAGGAGCCTCCCGTGCCTCCGTCACTATCATCTGAGAATGATGCCAAAGCTGACGATGTGATTGAAGAGAAGGTGAAAGCTGAGGAGGTGCTTGTGGCTGAAGATAAAGACGAAGTAAAAGGAGGTGAGGAGGCGGTTGTGGTTGAAGAGAAGGAGAAGGAGGAGGAGAAAGAGGAAGAGAAAGAGAAAGAGAAAAAGAAAGAAGAAGAGGTTACAGTAGGAGAGACAGAGAGCGAGTCGTTGAAGGAGGAGAGCAATAGGGTTTCTGATTCGGAGAGAAAGGGCATCGAAGAGCTGAAGAAGGTGGTGAGGGAGGAGTTGGAGCGGAAGGAGGAAGGCGAAGTATCCATCTGGGGCGTCCCTCTCTTTAAGGATCAGAGGACTGACGTCATTCTTCTGAAGTTCCTGAGAGCGCGAGACTTGAGGGTGAATGATTCTCTTGTGATGATTCAGAACACTCTCCGATGGAGAAAGGAGTTCGGCATCGATGCGCTTTTGGAGGAAGATCTGGGAGAGGAGTTGGAAAAGGTGGTCTTCATGCACGGCCAGGGAAGAGAGGGGCATCCCGTCTGTTACAACGTCTACGGAGAGTTCCAAAACAAGGAGCTGTACCAAAAGGCCTTCTCCACCGAGGAAAACCGAACCAAGTTTCTCCGATGGCGTATTCAGCTGTTGGAGCGCAGCATCAGGAACCTGGACTTCACTCCTGGAGGCATCAACACCATCTTCCAAGTCAATGACCTCAAAAACTCTCCTGGCCCTGCCAAACGGGAACTTCGCATTGCCACCAAACAAGCTTTGCAGTTGCTTCAGGACAACTATCCCGAGTTCGTTGCCAAACAGGTCTTCATCAATGCCCCTTGGTGGTATCTTGCATTCAATACCTTGATCAGTCCCTTCTTGACTCCGAGGACCAAAAGCAAATTTATCTTTGCTGGACCATCCAAGTCTCCCGATACTCTTTTCAAGTATATTTCTCCTGAGCAAGTGCCGGTTCAGTATGGTGGCCTCAGTGTAGACTTCTGCGACTGCAACCCCGATTTCACCATGTCTGATCCTGTCACCGAAATTCCTATAAAGCCAACCACTAAGCAAACTGTCGAAATTGCTATCTATGAGAAATGCATTATCGTTTGGGAGCTGCGGGTGGTGGGCTGGGAGGTTACCTATAACGCTGAATTCAAGCCTGATGCTAAAGATGCATATACAGTTGTCATACAGAAGGCCACAAAGATGTCCCCCACCGATGAACCAGTGGTTTCCAACAGCTTCAAAGTTGGTGAACTGGGGAAGTTATTGCTCACCATAGACAATCCTACCTTGAAAAATAAGAGGCTTCTTTACAGGTTCAATATCAAACCCTACTGTGATTGA 1431 0.4878 MAENDSNPPPPPPPAASPPQEPPVPPSLSSENDAKADDVIEEKVKAEEVLVAEDKDEVKGGEEAVVVEEKEKEEEKEEEKEKEKKKEEEVTVGETESESLKEESNRVSDSERKGIEELKKVVREELERKEEGEVSIWGVPLFKDQRTDVILLKFLRARDLRVNDSLVMIQNTLRWRKEFGIDALLEEDLGEELEKVVFMHGQGREGHPVCYNVYGEFQNKELYQKAFSTEENRTKFLRWRIQLLERSIRNLDFTPGGINTIFQVNDLKNSPGPAKRELRIATKQALQLLQDNYPEFVAKQVFINAPWWYLAFNTLISPFLTPRTKSKFIFAGPSKSPDTLFKYISPEQVPVQYGGLSVDFCDCNPDFTMSDPVTEIPIKPTTKQTVEIAIYEKCIIVWELRVVGWEVTYNAEFKPDAKDAYTVVIQKATKMSPTDEPVVSNSFKVGELGKLLLTIDNPTLKNKRLLYRFNIKPYCD 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01886 476 SMART CRAL_TRIO_N_2 147 172 IPR011074 -
Vian5g01886 476 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 186 355 IPR001251 -
Vian5g01886 476 SMART sec14_4 191 358 IPR001251 -
Vian5g01886 476 PANTHER PATELLIN-1 67 473 IPR044834 GO:0008289
Vian5g01886 476 MobiDBLite consensus disorder prediction 1 108 - -
Vian5g01886 476 MobiDBLite consensus disorder prediction 1 26 - -
Vian5g01886 476 ProSiteProfiles GOLD domain profile. 366 471 IPR009038 -
Vian5g01886 476 CDD SEC14 195 356 IPR001251 -
Vian5g01886 476 SUPERFAMILY CRAL/TRIO N-terminal domain 91 188 IPR036273 -
Vian5g01886 476 Pfam CRAL/TRIO domain 195 355 IPR001251 -
Vian5g01886 476 Gene3D - 100 391 IPR036865 -
Vian5g01886 476 MobiDBLite consensus disorder prediction 34 108 - -
Vian5g01886 476 Pfam CRAL/TRIO, N-terminal domain 122 171 IPR011074 -
Vian5g01886 476 Coils Coil 63 91 - -
Vian5g01886 476 SUPERFAMILY CRAL/TRIO domain 196 365 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01886 Vian-Chr5 40885244 40886999 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01886 151 350 Acyl Lipid Metabolism Gene Families AT5G47730 25.592 6.90e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01886 - - gmx:100804006 665.996