Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01854 ATGCTCGCTTGGAGTGTGATAGAATTCGGAGATCTGATGGATTCAGAGCTGAAGAACGCGTTGGATGCAATCAGGTGGGGAACTGATTATTTGATGAAAGCCACGAAAAATCCTTATTTGATTGTGGCACAAGTGGGTGATCCAAATGCCGACCATGACTGTTCGGAGAGACCAGAAGACATGGATACTCCTCGAACCTCGTACTTTCTAACTAAACAGAAGCCAGGTTCAGAGCTTGCAGCTGAGATTGCAGCTGCACTTTCAGCGTCTTCGATCGCATTTAGGAAAACCAATGCTTCCTATTCCAACATTCTTATCAAAAGAGCTATCCCAAATCCAGCAGGAATGTTATACATGGTGGGTTATGGAAGAAAGTATCCTCGGAAGATTCATCATCGTGGTTCGGTGTTGCCATGTTTGGATGCACACCCACAACGCCTTCGTTGTCGAGATGGAGATGTATACTTCAAATCAGACAAACCCAATCTCAACGTCCTGACAGGAGCCCTTGTTGGAGGACCAGCAGAAGATGATTCCTTTCAGGATTCTCGCTTCAATGTATCTCAATCAGAGCCTACCACCTACATCAACGCTCCTTTGTTGCTGTTTTGGCTTACTTAA 621 0.4525 MLAWSVIEFGDLMDSELKNALDAIRWGTDYLMKATKNPYLIVAQVGDPNADHDCSERPEDMDTPRTSYFLTKQKPGSELAAEIAAALSASSIAFRKTNASYSNILIKRAIPNPAGMLYMVGYGRKYPRKIHHRGSVLPCLDAHPQRLRCRDGDVYFKSDKPNLNVLTGALVGGPAEDDSFQDSRFNVSQSEPTTYINAPLLLFWLT 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01854 206 Gene3D - 1 111 IPR012341 GO:0005975
Vian5g01854 206 Gene3D - 112 205 IPR012341 GO:0005975
Vian5g01854 206 SUPERFAMILY Six-hairpin glycosidases 112 203 IPR008928 GO:0005975
Vian5g01854 206 Pfam Glycosyl hydrolase family 9 112 201 IPR001701 GO:0004553|GO:0005975
Vian5g01854 206 Pfam Glycosyl hydrolase family 9 1 109 IPR001701 GO:0004553|GO:0005975
Vian5g01854 206 PANTHER ENDO-1,4-BETA-GLUCANASE 1 109 - -
Vian5g01854 206 SUPERFAMILY Six-hairpin glycosidases 1 110 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01854 Vian-Chr5 40670002 40670999 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01854 1 110 Glycoside Hydrolase AT4G39010 57.143 5.99e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01854 K01179 - var:108339504 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01854 5 40670002 40670999 Vian5g01854 5 40670002 40670999 ECH