Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01848 ATGAACACTGATCCAAAAACTCCATTGCTGAGTCCTCCAAGTTCCATAACAAGGAAAAATGAGGGAAGAACACAAAAGGGTGTCCTTATTTTCATTGTTTCCATCGTTTTTCTCATGTCATTGGCTGCACTTGTCATAAGCCTCCATAGCCATAACATCCAACCTTTACTAAGTATTATCCAGAAGCCTCTCACGATCGAGATCAACTTAAGGTCTCTACCATTACAGCCTCGAGGTATTGCAGAAGGTGTTTCAGCAAAGTCAAATCCATATCTATGGCAGATAGGTTCATATAACTGGACAAACGCCATGTTATCGTGGCAAAGAACAGCTTTTCATTTTCAACCTCAGAAGAACTGGATGAACGATCCTAACGGTCCATTGTTTTACAAGGGGTGGTACCATTTGTTTTACCAATACAATCCTGATTCAGCTCTGTTTGCAAACATAACGTGGGGCCACGCCGTATCAAGGGACTTGATTCACTGGCTCCATCTTCCCATTGCGATGCTTCGAGATTCCTGGTACGATATCAACGGTGTATGGTCAGGATCGGCCACGCTTTTGCCAGATGGCAAAATCGTCATGCTCTACACTGGTAGCACCCATCAGAACGTGCAAGTCCAAAATCTTGCGTACCCCGCCAATCTATCTGATCCGCTTCTCATTCATTGGGTCAAGTACTCTGATAACCCACTCTTGGTGCCTCCACCGGGAATTGGGCCCAAGGATTTTCGTGACCCAACTACTGCGTGGATTGGGCCTGATGGCAAATGGAGGATCGCTATTGGGTCAAAGGTCAACCAGACAGGTCTTTCGTTGGTGTATAAAACCCAAGATTTTATCCACTACGAACTCAATGATCAGTACATGCATGAGGTCCCGGGTACGGGTATGTGGGAGTGCGTGGACTTTTACCCGGTTTCGGTAAATGGGTCGGATGGGTTGGATACATCTGCAAATGGGCCAGATGTGAAACATGTGTTGAAGTCTAGTTTGGATGACACTAGGGGGGATCATTATGCTATTGGGACGTACTTCAGTGAAAATGATACGTGGGTGCCCGATAACCCGGATGAGGATGTGGGTATCGGGTTGAAGTTGGACTATGGGAGATTCTATGCGTCAAAGACGTTTTATGACCAATACAAAAAGAGAAGGGTCTTGTGGGGTTGGATCAACGAATCAGACAGCGAAACCGCTGACTTGAAAAAGGGTTGGGCATCTCTTCAGAGTATTCCAAGAACAGTGGTGTTTGACAATAAAACTAGAGCTCATTTGCTTCAGTGGCCAGTGGAAGAAATAGAGAGCTTAAGGCTTAGCAGTTATGAATTTGAAGAAGTCGTGGTTAAGCCGGGCTCAGTTCTGCCATTGGACATAGGCCCTGCCACACAGTTGGACATATTTGCTGAATTTGAAATCGAATATTTAGCATCCAAAGAGACCGAGAAGAAGGAAAATGTAGGGTGTGGAAATGGAGCTTTTGACAGAAGTAGTCTGGGACCATTTGGCATTCTGGCTATTGCAGATGACCAACTTTCTGAGCTAACACCAATTTATTTTCATCTTTCTAGTACTACCACCAGTTTAACATCTTCCTTCTGTGTTGATGAAACCAGGTCTTCAAAGGCTCCTGATGTTTCAAAACTCGTTTTTGGAAGCGAAGTTCCAGTCGTGGACCATTCAGTCATTGAGAGCTTTGCTCAAGGAGGGAGAACTGTGATATCGTCTAGAGTTTATCCAACAAAAGCAATTTACGAAGCTGCAAGATTGTTTGTGTTCAACAACGCAACAGACATAAACATCAAGGCCTCACTCAAGATTTGGCAATTGAACTCAGCTTTTATACGTCCCTTTCCCTTTGACAAGAAGTTGTGA 1878 0.4446 MNTDPKTPLLSPPSSITRKNEGRTQKGVLIFIVSIVFLMSLAALVISLHSHNIQPLLSIIQKPLTIEINLRSLPLQPRGIAEGVSAKSNPYLWQIGSYNWTNAMLSWQRTAFHFQPQKNWMNDPNGPLFYKGWYHLFYQYNPDSALFANITWGHAVSRDLIHWLHLPIAMLRDSWYDINGVWSGSATLLPDGKIVMLYTGSTHQNVQVQNLAYPANLSDPLLIHWVKYSDNPLLVPPPGIGPKDFRDPTTAWIGPDGKWRIAIGSKVNQTGLSLVYKTQDFIHYELNDQYMHEVPGTGMWECVDFYPVSVNGSDGLDTSANGPDVKHVLKSSLDDTRGDHYAIGTYFSENDTWVPDNPDEDVGIGLKLDYGRFYASKTFYDQYKKRRVLWGWINESDSETADLKKGWASLQSIPRTVVFDNKTRAHLLQWPVEEIESLRLSSYEFEEVVVKPGSVLPLDIGPATQLDIFAEFEIEYLASKETEKKENVGCGNGAFDRSSLGPFGILAIADDQLSELTPIYFHLSSTTTSLTSSFCVDETRSSKAPDVSKLVFGSEVPVVDHSVIESFAQGGRTVISSRVYPTKAIYEAARLFVFNNATDINIKASLKIWQLNSAFIRPFPFDKKL 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01848 625 Pfam Glycosyl hydrolases family 32 N-terminal domain 113 431 IPR013148 -
Vian5g01848 625 MobiDBLite consensus disorder prediction 1 20 - -
Vian5g01848 625 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 117 443 - -
Vian5g01848 625 CDD GH32_Fruct1-like 119 417 - -
Vian5g01848 625 SUPERFAMILY Concanavalin A-like lectins/glucanases 431 615 IPR013320 -
Vian5g01848 625 SUPERFAMILY Arabinanase/levansucrase/invertase 106 432 IPR023296 -
Vian5g01848 625 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 56 614 - -
Vian5g01848 625 SMART glyco_32 113 571 IPR001362 GO:0004553|GO:0005975
Vian5g01848 625 Pfam Beta-fructofuranosidase, N-terminal domain 9 105 IPR021792 GO:0004564
Vian5g01848 625 Gene3D Glycosyl hydrolase domain; family 43 117 443 IPR023296 -
Vian5g01848 625 ProSitePatterns Glycosyl hydrolases family 32 active site. 113 126 IPR018053 GO:0004553|GO:0005975
Vian5g01848 625 Gene3D - 444 611 - -
Vian5g01848 625 Pfam Glycosyl hydrolases family 32 C terminal 434 610 IPR013189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01848 Vian-Chr5 40628133 40631125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01848 6 619 Glycoside Hydrolase AT1G12240 56.143 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01848 K01193 - gmx:100814788 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01848 5 40628133 40631125 Vian5g01848 5 40628133 40631125 ECH