Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01845 ATGGAGAGTGCTTTTGCAAGCGCTTCTGCGATTACAGACCAGAGGCAAAAAATAGAGCAGTATAAGAGCATACTCGCAGCTGTCATTTCGTCCAATGACATTGCTCAGTCTAGGAAATTCATCGATCACATGTTATCAGATGATGTTCCATTAGTAGTTTCGCGGCAGCTTTTGCAGACTTTTGCTCAAGAGTTGGGAAGATTGGAGCCTGAGATACAGAAAGAGATTGCTCATTACACCCTTGCCCAAATTCAGCCTCGTGTTGTGTCGTTCGAAGAGCAGGTTCTAGTTATTAGAGAGAAACTCGCTGAGCTTTATGAATCTGAGAAGCAATGGTCAAAAGCAGCTCAAATGCTCAGTGGTATTGACCTAGATTCAGGAATGAGGGTGATTGATGATGCATTCAGGTTGTCAAAGTGTGTCCAAATAGCTTGTTTATACCTTGAGGACGACGATGCTGTCAATGCTGAGGCTTTTATTAATAAAGCATCATTCTTGGTCAGCAGTAGTCAGCATGAAGTACTCAATTTAAAGTACAAGGTTTGCTATGCAAGGATCTTAGATCTGAAGAGGAAGTTTTTGGAAGCAGCATTACGCTATTATGATATATCTCAAATTGAGAAAAGGAAAATAGGAGACGAGGAGATTAATGAAGAAGCACTTGAGCAAACTTTATCTGCTGCTGTTACATGCACCATATTGGCAGCTGCAGGACCTCAGCGTTCCCGTGTTCTCGCTACTCTGTACAAGGTGAATGCTTCACTCATTAAATATTTAAAAGTCCTGTTTGCAAAGGTCAAATTTCATCACATTAAGAAAGCTCTTCTTCCAGACAATTTCACTGTACTGGACCGGGCTATGATTGAGCACAATCTTCTTAGCGCAAGCAAACTTTATACTAATATCAGCTTTGGTGAGCTAGGCACGCTGTTGGGGATCCCACCTCACAAGGCTGAGAAGATAGCATCAAGAATGATTTATGAGGATAGGATGAGAGGATCTATCGATCAGGTTGAAGCAGTCATACATTTTGATGACGACACTGAAGAGTTGCAGAGATGGGACCAACAGATTGTAGGCCTATGTCAAGCCCTCAATGATGTTTTGGATAGCATGGCCAAGAAGGGTTTTCCAGTTCCTGTTTAA 1146 0.4197 MESAFASASAITDQRQKIEQYKSILAAVISSNDIAQSRKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPEIQKEIAHYTLAQIQPRVVSFEEQVLVIREKLAELYESEKQWSKAAQMLSGIDLDSGMRVIDDAFRLSKCVQIACLYLEDDDAVNAEAFINKASFLVSSSQHEVLNLKYKVCYARILDLKRKFLEAALRYYDISQIEKRKIGDEEINEEALEQTLSAAVTCTILAAAGPQRSRVLATLYKVNASLIKYLKVLFAKVKFHHIKKALLPDNFTVLDRAMIEHNLLSASKLYTNISFGELGTLLGIPPHKAEKIASRMIYEDRMRGSIDQVEAVIHFDDDTEELQRWDQQIVGLCQALNDVLDSMAKKGFPVPV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01845 381 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 278 361 IPR000717 -
Vian5g01845 381 ProSiteProfiles PCI domain profile. 192 349 IPR000717 -
Vian5g01845 381 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 4 375 IPR040134 -
Vian5g01845 381 Gene3D - 275 353 IPR036388 -
Vian5g01845 381 FunFam COP9 signalosome complex subunit 4 273 353 - -
Vian5g01845 381 Pfam PCI domain 257 345 IPR000717 -
Vian5g01845 381 SUPERFAMILY "Winged helix" DNA-binding domain 275 350 IPR036390 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01845 K12178 - gmx:100793394 666.381