Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01835 ATGGCAATGAAGCTTCGCTCTCTCTCTCCTCGCCGCGCAGCCAAAGCCAACGCCACTCTCTCTCCTTTCCCCGCCGTCGCCATCGCCGACAGAACCCTTCTGCTCTCCGACCAGATTCTCCTCAAAATCCTCGCACTCGTCTCCGACTCACCCGCTCAGCGAAACTCCAATTCTCTTGTCTGCAAGCGCTGGCTCAATCTCCAAGGCCGTCTTCTCCGCTCCCTCATAATCTCCGACTGGAACTTCCTCCTCTCCGGCAGGCTCATCCACCGCTTCCCCAATCTCAACCACGTCGACTTGCTCTCCGCCGCCTTCATTTCACCTCGCAATTCCGCCATTCTCCTCAGCCACCGCGTCCTCTCCGTGCACCTTCATTCTGACCTCGCCCCCAATTGGTGCTTCTGTGAGGAAAACATGCTACCCGTCGAAGTCATCGACAACGGACTCGCCACCCTCGCCGCCGGCTGTCCAAACTTGCGCCGCCTCCACGTCATCGGCGCTAGCCAGATGGGGCTGCTGAGCGTCGCGGAGGAGTGTCCCACTCTGCAGGAACTCGAACTGCAGTGCTGCAGCGACAACGTTCTGCGCGGGATTGCGGCCTGTGCGAATCTTCAGATTCTGAAGCTCGTTGGGCATGTTGATGGGCTCTACAGTTCGGTGGTTTCTGATATCGGGTTGACAATTCTGGCGCAAGGGTGCAAGAGGCTGGTGAGGTTGGAGCTTGGTGGGTGCGAAGGAAGTTTTGATGGGATTAAGGCCATTGGGAAGTGTTGTTTAATGTTGGAGGAGTTGACGTTTTCTGATCATAAGATGGATGATGGATGGCTTGCTGCCATCCCGTTTTGTGAGAATTTAAAGACTTTGAGGTTTCAGTCTTGTAAGAGGATTGATCCCAATCCTGGAATGGAGGAGTATTTGGGTTCTTGCTCTGCTCTTGAAAGGTTGCATTTGCAGAAATGTCAGCTTCGGGATAAGAAGGGCGTTTCGGCTCTGTTTTCTGTGTGCAGGGCTGTCAGGGAGATTGTTCTTCAGGACTGTTGGGGATTGGATAATAGCATCTTCTCTTTTGCAATGATGTGCAGGCGGGTAAAGTTGTTTTACTTGGAAGGATGCTCATTACTAACGACAGAAGGTTTGGAGCATGTAATTCATTCATGGAAGGAGCTTCAGAGCCTTAGAGTAGTGTCATGTAAGAATATAAAGGAGTGTGAGATCTCTACTGCGCTGGCAACCCTGTTTACCAGTCTCAAGGAGTTGAGATGGAGCCCTGATACCAAATCACTTCTTCAATCCAGTGTTACAGGGATAACCATGGCAAAAAAAGGTGGTAAATTTTTCAAAAGGGCACGATAA 1353 0.5174 MAMKLRSLSPRRAAKANATLSPFPAVAIADRTLLLSDQILLKILALVSDSPAQRNSNSLVCKRWLNLQGRLLRSLIISDWNFLLSGRLIHRFPNLNHVDLLSAAFISPRNSAILLSHRVLSVHLHSDLAPNWCFCEENMLPVEVIDNGLATLAAGCPNLRRLHVIGASQMGLLSVAEECPTLQELELQCCSDNVLRGIAACANLQILKLVGHVDGLYSSVVSDIGLTILAQGCKRLVRLELGGCEGSFDGIKAIGKCCLMLEELTFSDHKMDDGWLAAIPFCENLKTLRFQSCKRIDPNPGMEEYLGSCSALERLHLQKCQLRDKKGVSALFSVCRAVREIVLQDCWGLDNSIFSFAMMCRRVKLFYLEGCSLLTTEGLEHVIHSWKELQSLRVVSCKNIKECEISTALATLFTSLKELRWSPDTKSLLQSSVTGITMAKKGGKFFKRAR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01835 450 CDD F-box_AtTIR1-like 34 70 - -
Vian5g01835 450 Gene3D Ribonuclease Inhibitor 171 427 IPR032675 -
Vian5g01835 450 FunFam F-box protein At5g51380 28 297 - -
Vian5g01835 450 Gene3D - 31 70 - -
Vian5g01835 450 SUPERFAMILY RNI-like 192 421 - -
Vian5g01835 450 PANTHER UNCHARACTERIZED 34 408 - -
Vian5g01835 450 SUPERFAMILY RNI-like 70 210 - -
Vian5g01835 450 SMART LRR_CC_2 360 385 IPR006553 -
Vian5g01835 450 SMART LRR_CC_2 309 334 IPR006553 -
Vian5g01835 450 SMART LRR_CC_2 233 257 IPR006553 -
Vian5g01835 450 SMART LRR_CC_2 201 232 IPR006553 -
Vian5g01835 450 SMART LRR_CC_2 156 181 IPR006553 -
Vian5g01835 450 FunFam F-box protein 298 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01835 Vian-Chr5 40508616 40510368 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01835 K10268 - gmx:100812193 743.806